PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun012221
Common NameVuAP1
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27544.3 Da    PI: 9.2379
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S56866849PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.94.3e-31959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  Vun012221  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYAT 59
               79***********************************************86 PP
2K-box109.24.5e-36751741100
      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                y++++ ++++++ + +++ e+++Lk++i+ Lqr++Rh++GedL+s+slkeLq+LeqqL+++lk+iR+++n+l++e+i+elqkkek +qe+n++L kk++e
  Vun012221  75 YAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKQIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKE 174
                566777888889999**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.394161IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.45E-42279No hitNo description
SuperFamilySSF554554.71E-34292IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-31323IPR002100Transcription factor, MADS-box
PfamPF003197.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-3084172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.07388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYATD  60
SCMEKILERY ERYAYAERQL VANDSESQGN WTIEYTRLKA KIDLLQRNHR HYMGEDLGSM  120
SLKELQSLEQ QLDTALKQIR TRRNQLMYES ISELQKKEKV IQEQNNMLAK KIKEKEKVAA  180
QHAQWEHPNH GVNASFLLPQ PLLNMGGNYR EEAPEVGRNE LDLTLEPLFP ATLDAFX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-22173172MEF2C
5f28_B4e-22173172MEF2C
5f28_C4e-22173172MEF2C
5f28_D4e-22173172MEF2C
6byy_A3e-22174173MEF2 CHIMERA
6byy_B3e-22174173MEF2 CHIMERA
6byy_C3e-22174173MEF2 CHIMERA
6byy_D3e-22174173MEF2 CHIMERA
6bz1_A4e-22174173MEF2 CHIMERA
6bz1_B4e-22174173MEF2 CHIMERA
6bz1_C4e-22174173MEF2 CHIMERA
6bz1_D4e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027920653.11e-170truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-135AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLE1CKY31e-169E1CKY3_VIGUN; APETALA1
STRINGGLYMA16G13070.11e-168(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-104MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]