PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000070-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 152aa    MW: 17448.2 Da    PI: 6.8193
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000070-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.6e-212374256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g+++AeIrdps  g  +r +lg+f+taeeAa+a+++a+ +l+g+
  WALNUT_00000070-RA 23 RYRGVRRRP-WGKFAAEIRDPSRHG--ARLWLGTFDTAEEAARAYDRAAFNLRGH 74
                        6********.**********96544..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-242382IPR016177DNA-binding domain
PROSITE profilePS5103225.1192381IPR001471AP2/ERF domain
SMARTSM003805.5E-382387IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-322383IPR001471AP2/ERF domain
CDDcd000181.40E-282382No hitNo description
PfamPF008471.7E-152374IPR001471AP2/ERF domain
PRINTSPR003679.3E-122435IPR001471AP2/ERF domain
PRINTSPR003679.3E-124763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEEPRKGKEE KREKEEKGRE EVRYRGVRRR PWGKFAAEIR DPSRHGARLW LGTFDTAEEA  60
ARAYDRAAFN LRGHLAILNF PNEYYPQVAG FPPHPPQFSS STSSSAPSGS TSERGSSSTG  120
QQRPVFEFEY LDDQVLEDLL ESEEEKRKRT QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-35181359114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841520.11e-107PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC53e-54ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2I4GCD91e-105A0A2I4GCD9_JUGRE; ethylene-responsive transcription factor ERF098
STRINGXP_008224367.12e-66(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-37ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]