PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000159-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 431aa    MW: 47405.8 Da    PI: 5.9082
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000159-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.83.1e-112694283374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          lLl+cAe v+ ++l +a  lL ++ el+sp+g++ qR+ ayf+ AL+ar+  s  ++y  l++++ + ++s++ ++al+ ++ +sP++kf
  WALNUT_00000159-RA  69 GLLLQCAESVALEHLDEAADLLPEIAELSSPYGSSPQRVGAYFAHALQARVITSYLGTYWPLSSKTRTLTQSQKIFSALQSYNSISPLVKF 159
                         58******************************************************************99********************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                         sh+taNqaI +a++gee+vH+iD+di+qGlQWp L++ LasR+++  s+R+Tg+gs    s++ le+tg+rL +fA++lg+pfef+++  k
  WALNUT_00000159-RA 160 SHFTANQAIFQALDGEEHVHVIDLDIMQGLQWPGLFHILASRNKKIRSMRVTGFGS----SSDLLESTGKRLGDFASSLGLPFEFHPFEGK 246
                         ********************************************************....9**************************7555 PP

                GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                           +  +l++L v+p+Ea++V++++  h l+d ++s       +Lk++  l+Pk++++veq+++h ++ Fl+rf+eal+yysalfd+l  +l
  WALNUT_00000159-RA 247 IGNVKDLSQLGVRPNEAIVVHWMH--HCLYDITGSDLG----TLKVLALLRPKLITIVEQDLSH-GGGFLARFVEALHYYSALFDALGDGL 330
                         5555599***************99..777777777777....9*********************.678*********************** PP

                GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                         ++++ +r++vE++l+g ei+n+ a  g +r+  +e++e+W e l+++GF+p++l+ + a+qa+lll +++++gy++ e++g+l lgWkd +
  WALNUT_00000159-RA 331 GEDNLDRHMVEQQLFGCEIRNIMAVGGPKRTG-EEKVERWGEELRRVGFQPISLGGNPAAQANLLLGMFPWKGYTLVEDNGCLKLGWKDLS 420
                         ****************************9665.677******************************************************* PP

                GRAS 367 LvsvSaWr 374
                         L+++SaW+
  WALNUT_00000159-RA 421 LLTASAWQ 428
                         *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.83641408IPR005202Transcription factor GRAS
PfamPF035141.1E-10969428IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MLQSLVPQSP ISNPSNSSAM KSKRVDREDS SGDDATTKRM NFSNEASVSG EKTMDEREEG  60
ESIGLKLLGL LLQCAESVAL EHLDEAADLL PEIAELSSPY GSSPQRVGAY FAHALQARVI  120
TSYLGTYWPL SSKTRTLTQS QKIFSALQSY NSISPLVKFS HFTANQAIFQ ALDGEEHVHV  180
IDLDIMQGLQ WPGLFHILAS RNKKIRSMRV TGFGSSSDLL ESTGKRLGDF ASSLGLPFEF  240
HPFEGKIGNV KDLSQLGVRP NEAIVVHWMH HCLYDITGSD LGTLKVLALL RPKLITIVEQ  300
DLSHGGGFLA RFVEALHYYS ALFDALGDGL GEDNLDRHMV EQQLFGCEIR NIMAVGGPKR  360
TGEEKVERWG EELRRVGFQP ISLGGNPAAQ ANLLLGMFPW KGYTLVEDNG CLKLGWKDLS  420
LLTASAWQPS N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-159504291379Protein SCARECROW
5b3h_D1e-159504291379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827796.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2I4F8190.0A0A2I4F819_JUGRE; scarecrow-like protein 23
STRINGEMJ165820.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]