PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00000212-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YB

Protein Properties

Length: 212aa MW: 24075.8 Da PI: 5.1392

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00000212-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	181.4	7.4e-57	30	126	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++eqdrflPianv+rimkkv+Pan+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv plk+yl+kyr WALNUT_00000212-RA 30 MKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVSPLKTYLQKYR 120 589************************************************************************************** PP NF-YB 92 elegek 97 e+egek WALNUT_00000212-RA 121 EIEGEK 126 *996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.8E-54	27	144	IPR009072	Histone-fold
SuperFamily	SSF47113	2.64E-41	33	152	IPR009072	Histone-fold
Pfam	PF00808	9.5E-28	36	100	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.7E-20	64	82	No hit	No description
PROSITE pattern	PS00685	0	67	83	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	6.7E-20	83	101	No hit	No description
PRINTS	PR00615	6.7E-20	102	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MEDESHGNEL DGGGSPESPC LKRSTSNINM KEQDRFLPIA NVGRIMKKVI PANGKISKDA 60 KETVQECVSE FISFVTGEAS DKCQREKRKT INGDDIIWAI TTLGFEDYVS PLKTYLQKYR 120 EIEGEKLSNI PKQQRQQQQH KQEQNIPYDD DTHVYGLDKN DNRTVYSSIS DLMSQPPFVA 180 TDQPFSLHFS PSSVQKQLLP QDQINDHWGI GN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	3e-45	30	121	1	92	Transcription factor HapC (Eurofung)
4g92_B	3e-45	30	121	1	92	Transcription factor HapC (Eurofung)
5g49_A	3e-45	26	121	2	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018827498.1	1e-158	PREDICTED: nuclear transcription factor Y subunit B-1
Swissprot	Q9SIT9	3e-68	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A2I4F778	1e-157	A0A2I4F778_JUGRE; nuclear transcription factor Y subunit B-1
STRING	GLYMA05G32680.1	6e-93	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13249	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	4e-70	nuclear factor Y, subunit B7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]