PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000269-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 506aa    MW: 57799 Da    PI: 4.6981
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000269-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS239.71.2e-731234882373
                GRAS   2 velLlecAeavssgdlelaqalLarlsel....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                         ++lLl  Aeav++++ +l+++++++l++l     +  +++++Rla +ft++L+++  +  +   + ++ ++     + +++  +++++e+s
  WALNUT_00000269-RA 123 TDLLLMGAEAVEAQNWALVSTAVEKLNDLlidiENIGDESFKRLALFFTQGLHSKSINALKMQHDPVALTP-----TNRTIYTFQMLQELS 208
                         689999*********************998875666669**************998884444444444444.....45889999******* PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfef 178
                         P++kf+h+taNqaIlea++g++++H+iDfdi++G+QWp+L+ +L+ R++    lR+T++ +p+++     +++tg+rL++fA+++++pf f
  WALNUT_00000269-RA 209 PYVKFAHFTANQAILEATQGDHEIHVIDFDIMEGIQWPPLMVELSMRKDT--FLRLTAILAPDQEnTVYYVQQTGKRLEEFADSINLPFMF 297
                         ***********************************************766..*********998878899********************* PP

                GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyys 265
                         + +v+ r ed+  e++  k g + + n++++  +++ +s sl +   ++L  v +lsPk++++v++e    a  +s sF+e f+eal++y+
  WALNUT_00000269-RA 298 DHMVMAREEDF--ESI--KVGNTFIANCMIHQLHMPYRSFSLVK---TFLGGVFKLSPKIFILVQEElfnfARIQSMSFVEFFCEALHHYT 381
                         *9877776666..666..56999*************9****999...********************88866779**************** PP

                GRAS 266 alfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee...aGFkpvplsekaakqaklllrkvksdgyrve 352
                         al dsl ++  +  +   + +E+e+l+ +i + +++  +e+++r+     W e   +    G++ +pls+ + +qak+l + ++  gy v+
  WALNUT_00000269-RA 382 ALTDSLvNSFCGVYKMGFRLIEKEFLESRILDSLSQFPNEKEKRML----WGEGDANsffKGYRRIPLSSGNICQAKSLASLFS-GGYWVQ 467
                         ******77777788888999********************666666....544333322269**********************.89**** PP

                GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                         +e+  l l+Wk+rpL+++S W
  WALNUT_00000269-RA 468 HEKSRLALCWKSRPLTTASIW 488
                         ********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.07196470IPR005202Transcription factor GRAS
PfamPF035144.2E-71123488IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEYEQIDYLF NSSCIEELHE CSLETGFSLE REDHHGLISP NIIQDVAIDD DECKERLLQL  60
EVGLVDFDSI CRATEMDLES SVEIGSGHDH KNQENQENVS VSTEGGFALK GIQEELMQES  120
SLTDLLLMGA EAVEAQNWAL VSTAVEKLND LLIDIENIGD ESFKRLALFF TQGLHSKSIN  180
ALKMQHDPVA LTPTNRTIYT FQMLQELSPY VKFAHFTANQ AILEATQGDH EIHVIDFDIM  240
EGIQWPPLMV ELSMRKDTFL RLTAILAPDQ ENTVYYVQQT GKRLEEFADS INLPFMFDHM  300
VMAREEDFES IKVGNTFIAN CMIHQLHMPY RSFSLVKTFL GGVFKLSPKI FILVQEELFN  360
FARIQSMSFV EFFCEALHHY TALTDSLVNS FCGVYKMGFR LIEKEFLESR ILDSLSQFPN  420
EKEKRMLWGE GDANSFFKGY RRIPLSSGNI CQAKSLASLF SGGYWVQHEK SRLALCWKSR  480
PLTTASIWVP KPKTKDKMMI KVVTSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3713049127381Protein SCARECROW
5b3h_A3e-3713049126380Protein SCARECROW
5b3h_D3e-3713049126380Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827457.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2I4F7330.0A0A2I4F733_JUGRE; nodulation-signaling pathway 2 protein-like
STRINGPOPTR_0019s02540.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.16e-48GRAS family protein