PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00000471-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

GRAS

Protein Properties

Length: 795aa MW: 86787 Da PI: 6.5067

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00000471-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	331.6	1.5e-101	434	793	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++L+++Ae v +g+++ aq +Larl+++ sp g+p++R+a+yf+eAL+ l+ + + + pp++ ++ +++ ++ a+k+fsevsP+++ WALNUT_00000471-RA 434 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLHRAAFYFKEALQLLLLMNNPVT---TPPRTPAPFDVIFKMGAYKVFSEVSPLIQ 521 679***********************************************9844444...4777777778*************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 f ++t+Nqa+lea++ ++r+Hi+Dfdi+ G+QW++++q+L +R++g+psl+iT+++sp++++ el ++e+L++fA e+g++fe +v+ WALNUT_00000471-RA 522 FVNFTCNQALLEALDDADRIHIVDFDIGFGAQWASFMQELPARNRGAPSLKITAFASPSTHHPVELGLMRENLTQFAIEIGIRFELEVVNF 612 ************************************************************************************966 PP GRAS 184 krledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 + l++ +l+ L+ ++Ea+aVn+ + + +++++l+ +L++vk+lsPk+vv ++ +d+++ +F +++l+al+ y +l++sl+ WALNUT_00000471-RA 613 ECLDQTsySLSILQAAENEAVAVNFPI--WSSSNQPAALPA----LLRFVKQLSPKIVVSFDRGCDRSDLPFPQHVLQALHSYIYLLESLD 697 66655533788899999****99..444556777777....*****************************************6 PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 a +s++ +k+Er+ll+++i+ v + ++ ++ W+ + +aGF+pv++s++ ++qa++++++++++g++ve++++slvl+W+ WALNUT_00000471-RA 698 AA-NVTSDAVSKIERFLLQPKIEITVLGRLRA----PDKMPLWKTLFASAGFSPVTFSNFSEAQAQCVVKRTPVRGFHVEKRQASLVLCWQ 783 66.5799************999988887....9999*********************************************** PP GRAS 364 drpLvsvSaW 373 +r+L+s+SaW WALNUT_00000471-RA 784 RRELISASAW 793 ******** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.77	407	774	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.3E-99	434	793	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MPFQLQGKGV FEIAGFAPVC AWNSNHNHKK EELLGLVNNN DNNHHEPTSV LHMRRSPSPP 60 TSASTLSSSF GGGGGGGSSD PPPATTASQP EFARKDEWAS ELQPIPSGLE AITGGGRCAL 120 GLVDWESMLS ETAPSPSHEQ EQSLLRWIAG DVDDSSFGFK QLLQSGNNTL DLDGNARLGI 180 VDQGPGVFET IGGVSATGNL IASVNQNPNF LAYSGSGGFA NSSGSSNNSY SNGKVGGASV 240 PSTSGFLDYK VSSIGLSGSN NNNCNIQNPV FTCSANSLPL PLTLPPGVVY QQQQFDVPDE 300 KPQVLNPQLL MSQQQQSQNP NLFLPLSFTQ HEEHLPQPPQ PNRHSSIGLD LTTQIPKVPV 360 AHAGHEFLLT KHQQQQQQQP PHLGFSPGVQ FVPQHLLQHK SLMVPKQKMG LAEEDLAHQH 420 HHQQQQQQQQ LALLDQLYKA AELVGTGNFS HAQGILARLN HQLSPVGKPL HRAAFYFKEA 480 LQLLLLMNNP VTTPPRTPAP FDVIFKMGAY KVFSEVSPLI QFVNFTCNQA LLEALDDADR 540 IHIVDFDIGF GAQWASFMQE LPARNRGAPS LKITAFASPS THHPVELGLM RENLTQFAIE 600 IGIRFELEVV NFECLDQTSY SLSILQAAEN EAVAVNFPIW SSSNQPAALP ALLRFVKQLS 660 PKIVVSFDRG CDRSDLPFPQ HVLQALHSYI YLLESLDAAN VTSDAVSKIE RFLLQPKIEI 720 TVLGRLRAPD KMPLWKTLFA SAGFSPVTFS NFSEAQAQCV VKRTPVRGFH VEKRQASLVL 780 CWQRRELISA SAWSC

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MPFQLQGKGV FEIAGFAPVC AWNSNHNHKK EELLGLVNNN DNNHHEPTSV LHMRRSPSPP  60
TSASTLSSSF GGGGGGGSSD PPPATTASQP EFARKDEWAS ELQPIPSGLE AITGGGRCAL  120
GLVDWESMLS ETAPSPSHEQ EQSLLRWIAG DVDDSSFGFK QLLQSGNNTL DLDGNARLGI  180
VDQGPGVFET IGGVSATGNL IASVNQNPNF LAYSGSGGFA NSSGSSNNSY SNGKVGGASV  240
PSTSGFLDYK VSSIGLSGSN NNNCNIQNPV FTCSANSLPL PLTLPPGVVY QQQQFDVPDE  300
KPQVLNPQLL MSQQQQSQNP NLFLPLSFTQ HEEHLPQPPQ PNRHSSIGLD LTTQIPKVPV  360
AHAGHEFLLT KHQQQQQQQP PHLGFSPGVQ FVPQHLLQHK SLMVPKQKMG LAEEDLAHQH  420
HHQQQQQQQQ LALLDQLYKA AELVGTGNFS HAQGILARLN HQLSPVGKPL HRAAFYFKEA  480
LQLLLLMNNP VTTPPRTPAP FDVIFKMGAY KVFSEVSPLI QFVNFTCNQA LLEALDDADR  540
IHIVDFDIGF GAQWASFMQE LPARNRGAPS LKITAFASPS THHPVELGLM RENLTQFAIE  600
IGIRFELEVV NFECLDQTSY SLSILQAAEN EAVAVNFPIW SSSNQPAALP ALLRFVKQLS  660
PKIVVSFDRG CDRSDLPFPQ HVLQALHSYI YLLESLDAAN VTSDAVSKIE RFLLQPKIEI  720
TVLGRLRAPD KMPLWKTLFA SAGFSPVTFS NFSEAQAQCV VKRTPVRGFH VEKRQASLVL  780
CWQRRELISA SAWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-30	423	794	8	378	Protein SCARECROW
5b3h_D	2e-30	423	794	8	378	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018848419.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A2I4GWZ6	0.0	A0A2I4GWZ6_JUGRE; scarecrow-like protein 22
STRING	evm.model.supercontig_29.139	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-123	GRAS family protein