PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000666-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 266aa    MW: 30383.6 Da    PI: 7.7499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000666-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-1167118254
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +  hn++Er RR+++N+ + +Lr+ll +a + + kKls  +++ ++v++I +L
  WALNUT_00000666-RA  67 KLYHNANERDRRKKMNNLYLTLRSLLDPA-ADQTKKLSIPATVSRVVKFIPEL 118
                         567***********************996.367777**************888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.67165118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1266143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.30E-966123No hitNo description
PfamPF000105.4E-967118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-967139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-871124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MFASPPTSLC MIASPLNQED LRSHAQIKSY AYSEIFGDHY PPPEPNAELN RSTPCTSISS  60
DPTMIKKLYH NANERDRRKK MNNLYLTLRS LLDPAADQTK KLSIPATVSR VVKFIPELRQ  120
QVEGLIQKKE ELLSSISRLG EQIHLQEYQR HHDMSSRSSL SAVSTNWLND SEVTIQISTY  180
KVQKSPLAEI LLSLEEDGFL LLNASSFGSF GSGRVFYNLH LQVERTSRLE REVVLNEKLK  240
SLYEKGKEFM NHEYIGSIHF KDLPIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018851306.10.0PREDICTED: transcription factor ORG2-like
TrEMBLA0A2I4H5730.0A0A2I4H573_JUGRE; transcription factor ORG2-like
STRINGVIT_08s0007g05300.t015e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.17e-38bHLH family protein