PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000881-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 471aa    MW: 52720.8 Da    PI: 5.7997
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000881-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS462.91.9e-141464681374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl+cA++v++g+le+a+ +L+++s la+pdgd+mqR+aayfteALa r+++ +++l kal++++ s   +see+ ++klf+e++P+l
  WALNUT_00000881-RA  46 LIHLLLTCANHVAAGSLENANIALEQISLLATPDGDTMQRMAAYFTEALADRILKAWPGLHKALNSTRIS--LVSEEILVQKLFFEMFPFL 134
                         689*************************************************************999987..7****************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         k++++++NqaI ea+ege+ vHiiD+++ +++QW+aL+q L++Rpegpp+lRiTgv++    +ke l +++ rL++ Ae+l++pf+fn+ v
  WALNUT_00000881-RA 135 KVAFVLTNQAIIEAMEGEKVVHIIDLNAAEPAQWVALIQVLSTRPEGPPHLRITGVHQ----QKEVLDQMAYRLTEEAEKLDIPFQFNA-V 220
                         **********************************************************....9**************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll..........................................................d 215
                          ++l++l++e+Lrvk+gEala+++vlqlh+ll                                                          +
  WALNUT_00000881-RA 221 ISKLDNLDFEKLRVKTGEALAICSVLQLHSLLafddellrkkspvasknlngihlprvlqinqstlgellekdlvnghsqspdsassspiS 311
                         99*********************************************************************************98755431 PP

                GRAS 216 esvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                               s    + d++L+++++  Pk+++++eq+++hn+++++er+leal+ y+alfd+le+ +pr+s er k+E+ l+g+ei+n++aceg
  WALNUT_00000881-RA 312 ------SnpsaKMDNFLNALWGFTPKLMIITEQDSNHNGSTLMERLLEALHSYAALFDCLESAVPRTSLERLKLEKLLFGEEIKNIIACEG 396
                         ......222445799**************************************************************************** PP

                GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         +er+erhe+lekW +r++ aGF++vpls++ + qa +ll+ ++ dgy+v+ee+g++v++W+dr+L+svSaWr
  WALNUT_00000881-RA 397 SERKERHEKLEKWIQRFDLAGFGNVPLSYYGMLQATRLLQGFGCDGYKVKEENGCVVICWQDRALFSVSAWR 468
                         ***********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.63820448IPR005202Transcription factor GRAS
PfamPF035146.6E-13946468IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MFQEEGSSSV TSSPLQLFSM MSPPPSLGSP YPWLKELKSE ERGLYLIHLL LTCANHVAAG  60
SLENANIALE QISLLATPDG DTMQRMAAYF TEALADRILK AWPGLHKALN STRISLVSEE  120
ILVQKLFFEM FPFLKVAFVL TNQAIIEAME GEKVVHIIDL NAAEPAQWVA LIQVLSTRPE  180
GPPHLRITGV HQQKEVLDQM AYRLTEEAEK LDIPFQFNAV ISKLDNLDFE KLRVKTGEAL  240
AICSVLQLHS LLAFDDELLR KKSPVASKNL NGIHLPRVLQ INQSTLGELL EKDLVNGHSQ  300
SPDSASSSPI SSNPSAKMDN FLNALWGFTP KLMIITEQDS NHNGSTLMER LLEALHSYAA  360
LFDCLESAVP RTSLERLKLE KLLFGEEIKN IIACEGSERK ERHEKLEKWI QRFDLAGFGN  420
VPLSYYGMLQ ATRLLQGFGC DGYKVKEENG CVVICWQDRA LFSVSAWRCK R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-42464684375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018831643.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_018831644.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2I4FJ200.0A0A2I4FJ20_JUGRE; scarecrow-like protein 3
STRINGEOY328060.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]