PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00000975-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

HD-ZIP

Protein Properties

Length: 326aa MW: 36432.8 Da PI: 4.3571

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00000975-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63	4.3e-20	93	146	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k WALNUT_00000975-RA 93 KKRRLTADQVQFLEKSFEVDNKLEPERKSQLAKDLGLQPRQVAIWFQNRRARWK 146 56789************************************************9 PP
2	HD-ZIP_I/II	130.3	7.8e-42	92	183	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+++qv++LE+sFe ++kLeperK++la++Lglqprqva+WFqnrRAR+ktkqlEkd++aL+++yd+lk+e ++L ke++eL++e+ WALNUT_00000975-RA 92 EKKRRLTADQVQFLEKSFEVDNKLEPERKSQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDFDALQASYDSLKAEYDNLLKEKNELKAEV 182 69**************************************************************************************987 PP HD-ZIP_I/II 92 k 92 WALNUT_00000975-RA 183 V 183 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.48E-20	74	150	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.815	88	148	IPR001356	Homeobox domain
SMART	SM00389	3.7E-20	91	152	IPR001356	Homeobox domain
CDD	cd00086	1.86E-18	93	149	No hit	No description
Pfam	PF00046	2.0E-17	93	146	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.8E-20	94	155	IPR009057	Homeodomain-like
PRINTS	PR00031	5.6E-6	119	128	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	123	146	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.6E-6	128	144	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.4E-15	148	189	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MAGGRVYTGG SGGGGGSSPL SVLFQNQKGS CASQPLDSLF LSGSSPSFLG SRSMVSFEDA 60 RGGNGSNRPF FGSYDHEDNG DDDLDDYFHQ PEKKRRLTAD QVQFLEKSFE VDNKLEPERK 120 SQLAKDLGLQ PRQVAIWFQN RRARWKTKQL EKDFDALQAS YDSLKAEYDN LLKEKNELKA 180 EVVLLTDKLL LRERERGGFE LSDTNNLSQE PLQKQVSESA CEAEASKVSC KQEDISSAKS 240 DIFDSDSPHY TDGVHSSLLE PGDSSHVFEP DQSDLSQDEE DNLMSKSLLP PFIFPKLEDV 300 DYSDPSESSC NFGFPVEDHA FWSWSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	148	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018831578.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A2I4FIU9	0.0	A0A2I4FIU9_JUGRE; homeobox-leucine zipper protein HAT5-like
STRING	EOY21713	1e-170	(Theobroma cacao)
STRING	POPTR_0015s07640.1	1e-171	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1500	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-44	homeobox 1