PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001077-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 212aa    MW: 24396.6 Da    PI: 9.1192
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001077-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.28.8e-193077148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +l+++++ +G ++Wk+ a + g++R++k+c++rw++yl
  WALNUT_00001077-RA 30 KGAWTAEEDRKLAEVIEIHGAKRWKKLADKSGLNRCGKSCRLRWLNYL 77
                        79********************************************97 PP
2Myb_DNA-binding51.13.1e-1683128148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  WALNUT_00001077-RA  83 RGNISAQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 128
                         7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.6572581IPR017930Myb domain
SuperFamilySSF466893.67E-2928124IPR009057Homeodomain-like
SMARTSM007171.0E-152979IPR001005SANT/Myb domain
PfamPF002494.2E-173077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-243184IPR009057Homeodomain-like
CDDcd001679.26E-113277No hitNo description
SMARTSM007171.5E-1582130IPR001005SANT/Myb domain
PROSITE profilePS5129420.80182132IPR017930Myb domain
PfamPF002491.3E-1483128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2585133IPR009057Homeodomain-like
CDDcd001672.14E-987128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MASTTDKSIK KEVSRLEAKN KIYTKKEVSK GAWTAEEDRK LAEVIEIHGA KRWKKLADKS  60
GLNRCGKSCR LRWLNYLRPN IKRGNISAQE EDLILRLHKL LGNRWSLIAG RLPGRTDNEI  120
KNYWNSHLSK KIKQEKQRGA ATVEGCNAQE NKAEEKVNVE MREEENSAGG VADSEKIKFD  180
VDEFFDFSNE SALNLEWISK FLEPDQDFND II
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-282713224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4680354e-32AM468035.1 Vitis vinifera contig VV78X155042.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833433.11e-153PREDICTED: transcription factor MYB114-like
SwissprotQ388504e-53MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2I4FP771e-152A0A2I4FP77_JUGRE; transcription factor MYB114-like
STRINGEOY272399e-96(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.13e-54myb domain protein 66
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]