PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001116-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 573aa    MW: 64228.1 Da    PI: 7.3539
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001116-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-0583104223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C+ Cgk F +   L  H+r H
  WALNUT_00001116-RA  83 VCKMCGKEFESLRALFGHMRHH 104
                         7*******************99 PP
2zf-C2H212.70.0004114134323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C+ Cg+ F +   L++H ++H
  WALNUT_00001116-RA 114 CKECGEGFASLRALTTHKKSH 134
                         *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-6637No hitNo description
PROSITE profilePS5015711.032936IPR007087Zinc finger, C2H2
PfamPF139129.7E-8933IPR007087Zinc finger, C2H2
SMARTSM003552.2931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.57282109IPR007087Zinc finger, C2H2
SMARTSM003550.005982104IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.26E-883134No hitNo description
PfamPF139129.5E-784106IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.824112139IPR007087Zinc finger, C2H2
SMARTSM003550.013112134IPR015880Zinc finger, C2H2-like
PfamPF139125.4E-6113136IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SuperFamilySSF576672.2E-8403426No hitNo description
PfamPF139125.4E-5404427IPR007087Zinc finger, C2H2
SMARTSM003550.2404426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.115404431IPR007087Zinc finger, C2H2
PROSITE patternPS000280406428IPR007087Zinc finger, C2H2
SuperFamilySSF576672.2E-8482509No hitNo description
PfamPF139123.4E-9487509IPR007087Zinc finger, C2H2
SMARTSM003551.1487509IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159487514IPR007087Zinc finger, C2H2
PROSITE patternPS000280489509IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MDQDQEQRHL CKLCNKSFLS GRVLGGHMRC HMSKNPSKRL KKVIKNNMDL EGDDHAGYGL  60
RENPKKSWKS SRSDKGTSGQ EIVCKMCGKE FESLRALFGH MRHHSGRQRS RIHCKECGEG  120
FASLRALTTH KKSHSERFEA CVESRTSSSQ QMELDNQSNS ENLGLVRRKR SNRMRYKICP  180
NSSFSSLNVS FSSKEIEPEV AEVAMCLVML SRGVTNWDVF CSVTESSDND SVAFEVKSSG  240
QTKRISNDDK GGIFVPCEVD DSFKTKKQRV DDCDSYASHS KVVLAEKRVS EFCENDSVFG  300
SAEEKKLGLE VPAEYKMPKL DDVSGGEIEK DNHNEMKIKP TEVEWDEAFP EGDGLDPADS  360
GFMKPGLSNK TRIDACDALL RGNSCKMSTS DAEILNNSWK KTQYKCKTCN KNFHSHQALG  420
GHQSIHRHKN SSELKIQNCG KSSRGDTVTE TEGSCKLINI EYKENLVEQE RSGGSLASYE  480
FRETKEHKCD LCFKVFASGQ ALGGHKRAHS FKNSETTAEE TVVIKQQIST ICDLVDLNIP  540
IILEEETNAD VGIKSWWVGN DQKHELTVGL LPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816593.10.0PREDICTED: uncharacterized protein LOC108987965
TrEMBLA0A2I4EB150.0A0A2I4EB15_JUGRE; uncharacterized protein LOC108987965
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-22C2H2-like zinc finger protein