PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00001185-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 260aa MW: 29766.2 Da PI: 10.1856

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00001185-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7.5e-32	192	246	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+ Wt eLH++Fveav+ LGG+e+AtPk+i+e+m+v+gLt++hvkSHLQkYRl+ WALNUT_00001185-RA 192 NRRTWTVELHAKFVEAVNFLGGPEVATPKQIREVMQVEGLTNDHVKSHLQKYRLH 246 799**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.938	188	248	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-16	190	248	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-27	190	247	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-7	193	244	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.0E-25	193	246	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MESVGVNPLE LSLSLKPSYF PKTITNLLKD LRNMNNVWEK LSVLAESLQM HKEELARLEV 60 FKRELPQSAL LLMESIDILE EEIEKVKNKE SEAERPLMEF LTLKNRRINF DDQKEHERQI 120 LGSNGVGKAQ ASSPAFLSNR DHCHLDTSTR PCKFNSGKAR GKEVMNGSGM SSVHPKARVP 180 KPFKPKPIRK TNRRTWTVEL HAKFVEAVNF LGGPEVATPK QIREVMQVEG LTNDHVKSHL 240 QKYRLHNKIF RSQDSSSTSW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	193	244	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	193	244	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	193	244	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	193	244	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	193	244	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018816710.1	0.0	PREDICTED: myb family transcription factor EFM-like isoform X2
TrEMBL	A0A2I4EBD5	0.0	A0A2I4EBD5_JUGRE; myb family transcription factor EFM-like isoform X2
STRING	EOY03817	2e-52	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14866	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	2e-28	G2-like family protein