PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001285-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 607aa    MW: 66129.6 Da    PI: 4.7447
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001285-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4471.3e-1362386001374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv++L++cAeav++++l+ a+al+++++ la++ + +m+++a+yf++ALa+r++r    +y    p++  + + s+ l++   f+e++P+l
  WALNUT_00001285-RA 238 LVHTLMACAEAVQQENLKIADALVKQVHLLAASLAGAMKKVATYFAKALARRIYR----IY----PQDCLDASYSDILQM--HFYETCPYL 318
                         689****************************************************....44....444433335555444..5******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf+h+taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++k++l+++g++La++Ae++gv+f+f+ +v
  WALNUT_00001285-RA 319 KFAHFTANQAILEAFATASRVHVIDFGLKQGMQWPALIQALALRPGGPPAFRLTGIGPPQPDNKDALQQVGWKLAELAETIGVEFQFRGFV 409
                         ******************************************************************************************* PP

                GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         +++l+d+++++L+++p  +Ea+aVn+v++lh ll++++++e+    vL  +k ++Pk+v vveqea+hn++ F++rf+eal+yys+lfdsl
  WALNUT_00001285-RA 410 TNSLADIDPSMLDIRPpeEEAVAVNSVFELHPLLARPGAIEK----VLLSIKAMKPKIVAVVEQEANHNGPVFMDRFTEALHYYSSLFDSL 496
                         ****************99************************....********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                         e +      ++  +++++lgr+i+nvva ega+r+erhetl +Wr r+++aGF+pv+l+++a  qa++ll+ ++ +dgyrv+e++g+l+lg
  WALNUT_00001285-RA 497 EGSTLVPPTQDLIMSEAYLGRQICNVVASEGADRVERHETLTQWRTRMGSAGFEPVHLGSNAFRQASMLLALFAgGDGYRVDENDGCLMLG 587
                         877767778889999999************************************************************************* PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W++rpL+++SaW+
  WALNUT_00001285-RA 588 WHTRPLIATSAWQ 600
                         ************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011294.0E-3050118No hitNo description
PfamPF120419.6E-3050112IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098567.859212579IPR005202Transcription factor GRAS
PfamPF035144.4E-134238600IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MNKRNHQDTS GGGDYGGLQG NVGKSDSSSM SSGKAKMWEE EQDAGTGVDD ELLAVLGYKV  60
KSSEMEDVAD KLEQLGMVMD AAPNLFCDTV HYNPSDLYGW VQSMLSELNN PPNTILDPML  120
QGQQIDDPLL APAEFSSVPT LGFLNSQQQR QIDTTQSSRI YNDDSEYDLR AIPGSAAYPQ  180
TQDRESNRKR LKTSSGSNSA PPLLPSSPQA AGGAAAGTVS DSSRPIVLAD SQETGVRLVH  240
TLMACAEAVQ QENLKIADAL VKQVHLLAAS LAGAMKKVAT YFAKALARRI YRIYPQDCLD  300
ASYSDILQMH FYETCPYLKF AHFTANQAIL EAFATASRVH VIDFGLKQGM QWPALIQALA  360
LRPGGPPAFR LTGIGPPQPD NKDALQQVGW KLAELAETIG VEFQFRGFVT NSLADIDPSM  420
LDIRPPEEEA VAVNSVFELH PLLARPGAIE KVLLSIKAMK PKIVAVVEQE ANHNGPVFMD  480
RFTEALHYYS SLFDSLEGST LVPPTQDLIM SEAYLGRQIC NVVASEGADR VERHETLTQW  540
RTRMGSAGFE PVHLGSNAFR QASMLLALFA GGDGYRVDEN DGCLMLGWHT RPLIATSAWQ  600
LITTDSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6723359914378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816848.10.0PREDICTED: DELLA protein GAI-like
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A2I4EBS30.0A0A2I4EBS3_JUGRE; DELLA protein GAI-like
STRINGEMJ161550.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein