PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001309-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 230aa    MW: 25864.4 Da    PI: 9.0607
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001309-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.8e-171360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+++Ed++l+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
  WALNUT_00001309-RA 13 KGAWSKQEDQKLIDYIRNHGEGCWRSLPKAAGLDRCGKSCRLRWINYL 60
                        79********************************************97 PP
2Myb_DNA-binding52.41.2e-1666110147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  WALNUT_00001309-RA  66 RGNFGQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                         899*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-24462IPR009057Homeodomain-like
PROSITE profilePS5129416.953860IPR017930Myb domain
SuperFamilySSF466894.21E-2811107IPR009057Homeodomain-like
SMARTSM007173.5E-131262IPR001005SANT/Myb domain
PfamPF002492.0E-151360IPR001005SANT/Myb domain
CDDcd001671.60E-101560No hitNo description
PROSITE profilePS5129425.65561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2563116IPR009057Homeodomain-like
SMARTSM007172.1E-1565113IPR001005SANT/Myb domain
PfamPF002494.7E-1566110IPR001005SANT/Myb domain
CDDcd001678.06E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MRKPCCDKEG TNKGAWSKQE DQKLIDYIRN HGEGCWRSLP KAAGLDRCGK SCRLRWINYL  60
RPDIKRGNFG QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRRKLISMGI  120
DPNNHRLNQI PSRPQPKCDV SAAATSSESM NNERKPLKSF GKIDRPVSDG ASSSLEDEMP  180
GSLDLNLDLT IAFPSSPPVT LVEEKRQSSK STGTREILLE SEPAPTLILF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29131157108B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816947.11e-170PREDICTED: transcription repressor MYB6-like
SwissprotQ388514e-78MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A2I4EC221e-168A0A2I4EC22_JUGRE; transcription repressor MYB6-like
STRINGXP_008229231.11e-115(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-80myb domain protein 6