PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00001450-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bZIP

Protein Properties

Length: 270aa MW: 29985.4 Da PI: 5.5488

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00001450-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27	9.8e-09	91	135	6	50
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 r rr NReA r++R++Kka+++ Lee+v +L N++L +l+ WALNUT_00001450-RA 91 RPRRPSGNREAVRKYREKKKARTAYLEEEVRKLHLLNQQLVRKLQ 135 6688888*********************************98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.7E-8	86	153	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.508	88	135	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-12	88	154	No hit	No description
Pfam	PF07716	2.1E-13	89	135	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.25E-6	92	135	No hit	No description
CDD	cd14686	1.89E-9	93	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MTETMDDEEV ELSENVNFLN FDSSINFQDS TSADSFLDDF FTNTRTCTHT HTCNPPGPDA 60 AHTHTCYHTH TQVLASEEDD HPDIKNSTSS RPRRPSGNRE AVRKYREKKK ARTAYLEEEV 120 RKLHLLNQQL VRKLQGQAIL EAEVLRLRGL LLDLRGKIDN ELGVLPYQKQ CNSSSLFKEG 180 DCGLQSADVE IGLQCQTNLP CFHPHAVSSS QAGVGRSGKM LIARGENCQP PFIDCQASTN 240 EMVSAEGQAM ETMETLVSPA PQAKQVAGHL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018817386.1	0.0	PREDICTED: basic leucine zipper 24-like
Swissprot	Q8GTS2	5e-53	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A2I4EDB9	0.0	A0A2I4EDB9_JUGRE; basic leucine zipper 24-like
STRING	XP_006482937.1	1e-111	(Citrus sinensis)
STRING	XP_006438937.1	1e-111	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2567	32	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51960.2	6e-27	basic leucine zipper 24

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]