PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001459-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 461aa    MW: 52020.8 Da    PI: 6.6141
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001459-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.23.6e-121444571374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPi 90 
                         l++lL +cA  v++g+ e+a+  L++ s+las dgd+mqR+aayfteALa +l++ s + l+kal++++    +  e+  ++k+f++++P+
  WALNUT_00001459-RA  44 LIHLLRACAYYVAAGSIENADIGLEHSSHLASRDGDSMQRIAAYFTEALADKLLKvSRPCLSKALNSTRIL--SPYEKNEVQKVFFDICPF 132
                         689****************************************************7778888888766665..478888899********* PP

                GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                         lk+++l++ +aIlea++ge++vHiiD+   +++QW+ Ll+++++Rpeg+p+lRiTg+++    +ke l +++  L+  Ae+l +pf+fn+ 
  WALNUT_00001459-RA 133 LKVAYLITIEAILEAMDGEKMVHIIDLCSFEPAQWIHLLRTISARPEGAPHLRITGIHE----DKEVLDKMALELTGEAEKLVIPFQFNP- 218
                         ***********************************************************....***************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrll...............................................desvsleserd 225
                         v  +le+l+le+L vk+gEa+aV+ vlqlh+ll                                               + s+s + + +
  WALNUT_00001459-RA 219 VLGKLENLNLESLGVKTGEAVAVSAVLQLHTLLatdeelltrsspsveknlqkhfhmdqhtlreflekdpinvymaspdsALSLSASPKME 309
                         7999**************************************************************************7644455555788 PP

                GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                         ++L+ ++slsPk++v++eqea+hn+ +F+er   al+yy+alfd+le++ +r+ + r+kvE++l+++ei+n++acegaer+erhe+l kW 
  WALNUT_00001459-RA 310 SFLNSLRSLSPKLMVITEQEANHNGFTFMERANGALNYYAALFDCLESTGSRAPKYRQKVEKMLFAEEIKNIIACEGAERKERHEKLDKWV 400
                         8************************************************99999************************************* PP

                GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          rle +GF++vp+s++   q ++ll++++ +gy+++ee+g+lv++W+dr+L+s+S Wr
  WALNUT_00001459-RA 401 LRLELSGFGKVPFSYHGRLQGRMLLQEYD-RGYNIKEENGCLVICWHDRSLFSISGWR 457
                         ****************************9.***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.68818438IPR005202Transcription factor GRAS
PfamPF035141.2E-11844457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAGAEHGSSQ TSSSLIPWMS LSTGLGPPYR WLKELKTEER GLYLIHLLRA CAYYVAAGSI  60
ENADIGLEHS SHLASRDGDS MQRIAAYFTE ALADKLLKVS RPCLSKALNS TRILSPYEKN  120
EVQKVFFDIC PFLKVAYLIT IEAILEAMDG EKMVHIIDLC SFEPAQWIHL LRTISARPEG  180
APHLRITGIH EDKEVLDKMA LELTGEAEKL VIPFQFNPVL GKLENLNLES LGVKTGEAVA  240
VSAVLQLHTL LATDEELLTR SSPSVEKNLQ KHFHMDQHTL REFLEKDPIN VYMASPDSAL  300
SLSASPKMES FLNSLRSLSP KLMVITEQEA NHNGFTFMER ANGALNYYAA LFDCLESTGS  360
RAPKYRQKVE KMLFAEEIKN IIACEGAERK ERHEKLDKWV LRLELSGFGK VPFSYHGRLQ  420
GRMLLQEYDR GYNIKEENGC LVICWHDRSL FSISGWRFGR N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-54264561378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018817550.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR81e-165SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2I4EDS90.0A0A2I4EDS9_JUGRE; scarecrow-like protein 3
STRINGXP_002513107.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-165scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]