PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001605-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 276aa    MW: 30464.6 Da    PI: 6.4444
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001605-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.8e-1898147255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  WALNUT_00001605-RA  98 TFRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 147
                         59****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.86698155IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2198156IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-3198156IPR001471AP2/ERF domain
SMARTSM003804.2E-3698161IPR001471AP2/ERF domain
PfamPF008472.8E-1299147IPR001471AP2/ERF domain
PRINTSPR003677.4E-1099110IPR001471AP2/ERF domain
CDDcd000189.04E-3399157No hitNo description
PRINTSPR003677.4E-10121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEEHINLESG AAHDHNLLSS SSSSSSSSST ICGSSTTKNN SGANKNTKSS PKGSRSRSLA  60
AQDHHSLDNH EDDQDHHDHR KRPKSSTTDG NDDGKHPTFR GVRMRNWGKW VSEIREPRKK  120
SRIWLGTYPT AEMAARAHDV AALAIKGASA YLNFPELAQE LPRPVTKSPK DIQAAAAKAA  180
ASTFVQEPRI RSQVEPIPGM ESSISATLSM DNTEESTICS PCTDEDNTLF DLPDLFIKGT  240
DLSLDHHGLC YYSSMWQLCA ADTVFRLEDS YLWEYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-16951551172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816034.10.0PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ74e-68ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2I4E9H70.0A0A2I4E9H7_JUGRE; ethylene-responsive transcription factor ERF034-like
STRINGcassava4.1_021971m3e-85(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-66ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]