PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001632-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 741aa    MW: 81009.4 Da    PI: 6.2498
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001632-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.13.6e-1073807402374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         v++L+++Ae +++g+ +laq +Larl+++ sp g+p+qR+a+yf+eAL+  l+   +++ +++++s+ ++ + + ++ a+k fse+sP+l+
  WALNUT_00001632-RA 380 VDQLVKAAELIETGNPALAQGILARLNHQLSPIGKPFQRAAFYFMEALQLLLHM--NTTGNSFTMSPPPPISLIFKIGAYKSFSEISPVLQ 468
                         789*************************************************98..7888888999999899******************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         f+++t+Nqa+lea+eg++r+H++Dfdi+ G+QW++++q+La R++g+p l+iT+++sp+++++ el  t+e+L++fA+e+++ fef++l  
  WALNUT_00001632-RA 469 FANFTCNQALLEALEGCDRIHVVDFDIGFGGQWASFMQELALRNGGSPGLKITAFSSPSTHDELELGFTQENLKHFASEINIAFEFEILSL 559
                         ****************************************************************************************977 PP

                GRAS 184 krledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         ++l++   + +Lrv++ Ea+aVnl ++ ++ +  + sl+s    vL++vk+lsPk++v  ++ +d+++ ++ +++++a++ ys+l++sl+a
  WALNUT_00001632-RA 560 DSLNSGsWPLSLRVSETEAIAVNLPIASFSNY--PSSLPS----VLRFVKQLSPKIMVSLDRGCDRTDVPLPHHIVHAIQSYSSLLESLDA 644
                         7776652467899999**********887777..666666....*********************************************87 PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                             ++++ +k+Er+ll++ i+++v  ++++     e+   W++ + ++GF+p+++s+++++qa++l+++++ +g++ve++++slvl+W++
  WALNUT_00001632-RA 645 I-NVNHDTLQKIERHLLQPGIEKIVLGRHRS----PERTPPWKNLFLSSGFSPLTFSNFTESQAEYLVQRIPARGFHVEKKQASLVLCWQR 730
                         7.67999*******************99998....9999**************************************************** PP

                GRAS 365 rpLvsvSaWr 374
                         ++L+s+SaW+
  WALNUT_00001632-RA 731 KELISASAWK 740
                         *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.894353720IPR005202Transcription factor GRAS
PfamPF035141.2E-104380740IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MKAMPLPFDD FQGKGVLGFS TTASSDFSQH HHRHHQQSQK WHTNKENCYV GTEPTSVLDT  60
RRSPSPPTST STLSSSLGNG GSGSTDTNTN TNTTGVAAAA AAASENPSQT GLEIGEKCGL  120
GMEDWEGVLS ESSPGQEQSI LRMIMGDIED PSVGLNKLLQ GGSIGSHQDL EFNAGFGIID  180
QATGFGFEPI STANSVASID PSLPIHSSDF PFGNARLGSI SVPSPNPSPL FSTPTSNALP  240
VSLPPGVFLQ QQLQAIEAVD EKPQIFNPQV VINQNQAQYA QNQALFMPLT YANLQEHHLL  300
SPPPAKRLNS GTIGANYQVP KVPFSDSGQE LFLRGQQQQQ GHMLSQHSIQ QRPMMVAAKQ  360
KMVNNEFVNH QQQLLHQEIV DQLVKAAELI ETGNPALAQG ILARLNHQLS PIGKPFQRAA  420
FYFMEALQLL LHMNTTGNSF TMSPPPPISL IFKIGAYKSF SEISPVLQFA NFTCNQALLE  480
ALEGCDRIHV VDFDIGFGGQ WASFMQELAL RNGGSPGLKI TAFSSPSTHD ELELGFTQEN  540
LKHFASEINI AFEFEILSLD SLNSGSWPLS LRVSETEAIA VNLPIASFSN YPSSLPSVLR  600
FVKQLSPKIM VSLDRGCDRT DVPLPHHIVH AIQSYSSLLE SLDAINVNHD TLQKIERHLL  660
QPGIEKIVLG RHRSPERTPP WKNLFLSSGF SPLTFSNFTE SQAEYLVQRI PARGFHVEKK  720
QASLVLCWQR KELISASAWK C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3439474018375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820345.10.0PREDICTED: scarecrow-like protein 27
TrEMBLA0A2I4ELR60.0A0A2I4ELR6_JUGRE; scarecrow-like protein 27
STRINGEOX962960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-150GRAS family protein