PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001657-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HD-ZIP
Protein Properties Length: 319aa    MW: 36262.3 Da    PI: 4.319
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001657-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1887140356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++t +q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa+ k
  WALNUT_00001657-RA  87 KKRRLTVDQVQLLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFK 140
                         56689***********************************************88 PP
2HD-ZIP_I/II126.51.2e-4087177292
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkrrl+ +qv+lLE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+k kqlEkdy++Lk++yd+lk + ++L +e+e+L++e+ 
  WALNUT_00001657-RA  87 KKRRLTVDQVQLLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKIKQLEKDYDSLKASYDRLKVDYDNLLEEKESLKNEVI 177
                         9**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1873143IPR009057Homeodomain-like
PROSITE profilePS5007116.82782142IPR001356Homeobox domain
SMARTSM003893.2E-1784146IPR001356Homeobox domain
CDDcd000861.30E-1785143No hitNo description
PfamPF000465.9E-1687140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-1989150IPR009057Homeodomain-like
PRINTSPR000314.9E-6113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000314.9E-6122138IPR000047Helix-turn-helix motif
PfamPF021833.6E-16142182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MVGGEVYGSA SNMSVLLQNE RLPCSSEVLE PLWIPGGPNP SLHASKSMVN YEDVNGGDAA  60
ARPFFQPLDK DESVDDDYDG CFHQPGKKRR LTVDQVQLLE RNFEVENKLE PERKVQLAKE  120
LGLQPRQVAI WFQNRRARFK IKQLEKDYDS LKASYDRLKV DYDNLLEEKE SLKNEVISLE  180
EKFLVREKVK ENVEPLDATK LSSAETQEPI PNAVSEIMSI VAIPVCKQED ASSAKSDVFD  240
SDSPHYTDGN HSSLLEPAYS SHVFEPDQSD FSQDEEDDRS KIPLPQAFYL KVEDGCNEPA  300
NYCNFGFPVE DQPLLYWNY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARFKIKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018831127.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A2I4FHL10.0A0A2I4FHL1_JUGRE; homeobox-leucine zipper protein HAT5-like
STRINGXP_007157405.11e-135(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-42homeobox 1