PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00001735-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

ZF-HD

Protein Properties

Length: 192aa MW: 21414.8 Da PI: 7.0739

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00001735-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	88.7	5.8e-28	14	64	4	57
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y+eCl+NhAaslG++a+DGCgEf+ + ++++ l+CaACgCHRnFHR+ + WALNUT_00001735-RA 14 DVYRECLRNHAASLGSYATDGCGEFTLD---DSSPGCLQCAACGCHRNFHRKVT 64 58***********************8...6789***************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.2E-23	15	64	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.0E-22	16	62	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-17	16	62	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.726	16	63	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	5.7E-27	109	176	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.29E-14	112	175	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.9E-27	117	175	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MEMEMEMETE NANDVYRECL RNHAASLGSY ATDGCGEFTL DDSSPGCLQC AACGCHRNFH 60 RKVTYVPTHV RGGGASYSSR GGREVPETTA ELMDYTGGGR QAVMVESGEA AERNFSKKRF 120 RTKFTQDQKE KMLAFAEKLE WKLQRKDLDD EIERFCRGVG VSRQVFKVWM HNHKNASSSS 180 SASTGNASSL TQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-21	118	180	18	79	ZF-HD homeobox family protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018823409.1	1e-144	PREDICTED: zinc-finger homeodomain protein 11-like
TrEMBL	A0A2I4EVI3	1e-142	A0A2I4EVI3_JUGRE; zinc-finger homeodomain protein 11-like
STRING	XP_004137520.1	6e-83	(Cucumis sativus)
STRING	XP_004174113.1	6e-83	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7982	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-40	homeobox protein 22