PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002144-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 578aa    MW: 64317.4 Da    PI: 8.6328
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002144-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00078100122123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C++C+k F +   L  H+r+H
  WALNUT_00002144-RA 100 HICNICDKGFGSGKALGGHMRMH 122
                         68********************9 PP
2zf-C2H217.98.8e-06168189223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C  Cgk F++   L  H+r+H
  WALNUT_00002144-RA 168 TCYVCGKKFPTTKALFGHMRSH 189
                         6********************9 PP
3zf-C2H213.80.00017431453123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y C+ C+ksF+++  L  H + H
  WALNUT_00002144-RA 431 YICSVCNKSFPTHQALGGHKSIH 453
                         89**************9998887 PP
4zf-C2H212.10.00059495515121
                         EEETTTTEEESSHHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                         y+C++C+k+F++   ++ H r
  WALNUT_00002144-RA 495 YRCKICNKTFPTGQAFVGHKR 515
                         9***********999999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.56E-696126No hitNo description
Gene3DG3DSA:3.30.160.604.9E-499123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-8100122IPR007087Zinc finger, C2H2
SMARTSM003550.018100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SMARTSM003550.087167189IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076167194IPR007087Zinc finger, C2H2
SuperFamilySSF576673.54E-9168189No hitNo description
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
PfamPF139123.0E-6169190IPR007087Zinc finger, C2H2
SuperFamilySSF576673.54E-9426453No hitNo description
PfamPF139123.4E-9431453IPR007087Zinc finger, C2H2
SMARTSM003550.0071431453IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097431458IPR007087Zinc finger, C2H2
PROSITE patternPS000280433453IPR007087Zinc finger, C2H2
SuperFamilySSF576675.25E-5494519No hitNo description
PfamPF139123.5E-9494517IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.346495522IPR007087Zinc finger, C2H2
SMARTSM003550.0024495517IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280497517IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MISYWRGTLK SAVQSSSTHD YVKLMDELNQ GSRILGDDHH NMPCAAENAD SSRSRILGNN  60
IHTNGNGRLC IELKVAKAKL VDQQQKQEHP LPLVAKEFPH ICNICDKGFG SGKALGGHMR  120
MHVQARNKEL LENIQNPKFK KHPTAADDLS TARRAKTNAS VSFIGEPTCY VCGKKFPTTK  180
ALFGHMRSHP GRPWRGVVPP PPDKTKASSS SSTLSDDKIG SASASITSTD AIVVNLSGSL  240
SAWKVTGKRG RKSITASTRC YGTSGLSQGL EEGMQEAIYD LMMLANSNPN KRLIDDSDPQ  300
VAFDNMDPPT NARNLTWRNE KLSSHDEHVP KKINDDKVNE KATLETAPSN AHWKLSREDG  360
DWRPRDYFYR NGAAHEHEDQ LHLYYSDNSE LVSDDEISGK MMIRKVRKKI RKTMNHSHIN  420
KVPVTSNIRS YICSVCNKSF PTHQALGGHK SIHNKLMKYR QTMDESHLAA NDSTTDDIYG  480
HQVDDQTHVL AAGTYRCKIC NKTFPTGQAF VGHKRCHVEL QSSQLTEEAK AQSSQVTSPG  540
EASQITGRKI FDFDLNDLPA MEVLEEGIDV ESVLYVRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403411RKVRKKIRK
2404410KVRKKIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822159.10.0PREDICTED: zinc finger protein 236-like
TrEMBLA0A2I4ERZ40.0A0A2I4ERZ4_JUGRE; zinc finger protein 236-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.14e-17C2H2 family protein