PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00002151-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 435aa MW: 48367.8 Da PI: 6.4592

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00002151-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.4	2.6e-13	62	113	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er RR+++N ++ Lr+llP+a + kKls +++ + ++YI +L WALNUT_00002151-RA 62 QKLNHNASERARRKKMNGLYSSLRSLLPEA--DQMKKLSIPTTVSRMIKYIPEL 113 5789***********************6..49999************988 PP
2	HLH	41.8	1.9e-13	267	318	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er RR+++N ++ Lr+llP+a + kKls +++ + ++YI +L WALNUT_00002151-RA 267 QKLNHNASERDRRKKMNGLYSSLRSLLPEA--DQMKKLSIPTTVSRMIKYIPEL 318 5789***********************6..49999************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.373	61	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.85E-11	62	117	No hit	No description
Pfam	PF00010	1.4E-10	62	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-13	62	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-12	63	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-7	67	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.418	266	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-10	267	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-13	267	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.43E-11	267	322	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-12	268	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.0E-8	272	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MLAIGLESEQ YSINQDQYCQ SYEDPQTFES AHHKQVGLDP HAHVTAPTAP VGGGGGDPKM 60 VQKLNHNASE RARRKKMNGL YSSLRSLLPE ADQMKKLSIP TTVSRMIKYI PELEQQVVGL 120 IQRKEELLSR ISRQVDQNTH QENQPKGSVA AWISLSTVSA SRVNDREVVI QIPTCEDQKT 180 PLSEILLALE EDGLLLLNAS SFEVFGGRAF YNLHLQEYCQ SYGIHEDPQT FESAHHKQVG 240 LDPHAHVTAP TAPVGGGGGG GDPKMVQKLN HNASERDRRK KMNGLYSSLR SLLPEADQMK 300 KLSIPTTVSR MIKYIPELEQ QVVGLIQRKE ELLSRISRQV DQNTHQENQP KGSVAAWISL 360 STVSASRVND REVVIQIPTC EDQKTPLSEI LLALEEDGLL LLNASSFEVF GGRAFYNLHL 420 QEVIKIDKVD ACTTI

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MLAIGLESEQ YSINQDQYCQ SYEDPQTFES AHHKQVGLDP HAHVTAPTAP VGGGGGDPKM  60
VQKLNHNASE RARRKKMNGL YSSLRSLLPE ADQMKKLSIP TTVSRMIKYI PELEQQVVGL  120
IQRKEELLSR ISRQVDQNTH QENQPKGSVA AWISLSTVSA SRVNDREVVI QIPTCEDQKT  180
PLSEILLALE EDGLLLLNAS SFEVFGGRAF YNLHLQEYCQ SYGIHEDPQT FESAHHKQVG  240
LDPHAHVTAP TAPVGGGGGG GDPKMVQKLN HNASERDRRK KMNGLYSSLR SLLPEADQMK  300
KLSIPTTVSR MIKYIPELEQ QVVGLIQRKE ELLSRISRQV DQNTHQENQP KGSVAAWISL  360
STVSASRVND REVVIQIPTC EDQKTPLSEI LLALEEDGLL LLNASSFEVF GGRAFYNLHL  420
QEVIKIDKVD ACTTI

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA), UV LIGHT, and heat treatments. Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:12887587, ECO:0000269\|PubMed:17516080}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018826176.1	1e-156	PREDICTED: transcription factor ORG2-like
Swissprot	Q9M1K1	8e-51	ORG2_ARATH; Transcription factor ORG2
TrEMBL	A0A2I4F3F0	1e-155	A0A2I4F3F0_JUGRE; transcription factor ORG2-like
STRING	VIT_13s0047g00450.t01	7e-67	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2402	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	2e-44	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Matsuoka K, et al. Gibberellin-induced expression of Fe uptake-related genes in Arabidopsis. Plant Cell Physiol., 2014. 55(1): p. 87-98 [PMID:24192296] Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Shen C, et al. Involvement of endogenous salicylic acid in iron-deficiency responses in Arabidopsis. J. Exp. Bot., 2016. 67(14): p. 4179-93 [PMID:27208542] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Kailasam S,Wang Y,Lo JC,Chang HF,Yeh KC S-Nitrosoglutathione works downstream of nitric oxide to mediate iron-deficiency signaling in Arabidopsis. Plant J., 2018. 94(1): p. 157-168 [PMID:29396986] Kurt F,Filiz E Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: insights into iron (Fe) homeostasis. Biometals, 2018. 31(4): p. 489-504 [PMID:29546482]