PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00002225-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 203aa MW: 23297.1 Da PI: 5.4309

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00002225-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26	3.1e-08	45	96	2	54
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrt 54 +Y +Y+k+ GF v+k++sk+ ++g++ + +vC +eg+++++ + k r+t WALNUT_00002225-RA 45 YYMKYGKHEGFGVCKRNSKQD-DDGNVRWFILVCVREGTSKSKAANVLKPRQT 96 8************998776.9999**************99984444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-6	45	96	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MDFDMEHVDN EYDEVEVDDE QECAEIVDEP KVGMTFSSAE EVLSYYMKYG KHEGFGVCKR 60 NSKQDDDGNV RWFILVCVRE GTSKSKAANV LKPRQTEKIG EPIDPPTSME GRKSAVLSPL 120 VVRSKGRPPS RRKTHPIEKV LKKASTRRRL RCDPVEVLGE QSNQIADQCN VSSIQYVSPQ 180 TQVQPSQLHL SEQDDYQDKY KWW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13793	7	17