PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00002349-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 255aa MW: 29497.2 Da PI: 6.0634

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00002349-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82	9.9e-26	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY Y+++ GF vr++++++s+ n++++ ++fvCskeg+r+++ +++++ + + tr gC+a++++ +++ kw +tk+++eHnH+l WALNUT_00002349-RA 78 DFYVVYGRRSGFIVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPITREGCQAMIRLALRDGTKWIITKFVKEHNHKL 167 6****************************************99883332.244899******************************9 PP FAR1 90 a 90 + WALNUT_00002349-RA 168 M 168 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-23	78	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MIDHQSLQGF DLDESELDMQ DETYEKDGMI EDGLPNNLNS CASEADTISE QSVEDLPIAE 60 ALEPYIGMEF NSRDEARDFY VVYGRRSGFI VRIHHNRRSR VNNQVIGQDF VCSKEGFRAK 120 KYVHRKDRVL PPPPITREGC QAMIRLALRD GTKWIITKFV KEHNHKLMSP SKVPCRGSGK 180 HLVSEDEKDK RIRELSLELY NERQKCKRRC AAYEEQLKMI LKDLEKHTEH ISKTVADVVQ 240 SIKDIEDERS ESDSG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018806129.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_018806137.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I4DG52	0.0	A0A2I4DG52_JUGRE; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009347669.1	1e-150	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-44	FAR1 family protein