PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00002350-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 249aa MW: 28339.1 Da PI: 6.1335

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00002350-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.5	8.2e-27	81	171	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +YAk++GF++r+++ ++s +n+ i+ r+fvCs+eg+r+ +++ +++ +++ tr gCka++++ ++ gkw+vtk++ eHnH+ WALNUT_00002350-RA 81 DFYYDYAKQMGFTIRTNRIRHSLKNTAIIGRDFVCSREGFRAAKHTLrKDR--VlpPKPITREGCKAMIRLAARDGGKWVVTKFVREHNHK 169 6***************************************999882233..24599******************************* PP FAR1 89 la 90 l+ WALNUT_00002350-RA 170 LM 171 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-24	81	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MAGIAGVHDL LGSDDGVSDE ETVENSGELE ATEDGLLQHC YLNSVSNDHL SLIEPSRGDL 60 TVESLEPYIG MAFPSLDDAR DFYYDYAKQM GFTIRTNRIR HSLKNTAIIG RDFVCSREGF 120 RAAKHTLRKD RVLPPKPITR EGCKAMIRLA ARDGGKWVVT KFVREHNHKL MTHCKFSGEL 180 PIVNILSEEE KDKKIQDLHD ELRHERKRSS AFREQLCLIL KDIEEHAQFM SLRVEDIANS 240 MKEIELGNT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018806145.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_018806152.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_018806156.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_018806162.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A2I4DG74	0.0	A0A2I4DG74_JUGRE; protein FAR1-RELATED SEQUENCE 7-like
STRING	XP_002533358.1	1e-130	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15728	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-42	FAR1 family protein