PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002524-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 350aa    MW: 36906.7 Da    PI: 6.0364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002524-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-192272256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                        ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++aa+++l+g+
  WALNUT_00002524-RA 22 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDAAARNLRGA 72
                        689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.7842279IPR001471AP2/ERF domain
PfamPF008475.2E-132271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-292279IPR001471AP2/ERF domain
SMARTSM003803.2E-352285IPR001471AP2/ERF domain
CDDcd000181.22E-162279No hitNo description
PRINTSPR003671.1E-72334IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-202380IPR016177DNA-binding domain
PRINTSPR003671.1E-74561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGTPNNVPRG RSRKSSSRGH HRFVGVRQRP SGRWVAEIKD SLQKVRLWLG TFDTAEDAAR  60
AYDAAARNLR GANARTNFEL PQSGSNTLSG AGADSVFNES AEPFSFEQGS GAVTPEADGL  120
VGALKAKLLD GKGLRMLAAP ASCLGAKLAS SGMVENSSPD NIGTKRGQSS SPTAAVAPRG  180
VGILDSMQVS NNYPGPNKLA DSLLDHNDHD HEAVAGHVGV QWHQSCQAAL PTRITPWSSE  240
PAYEVPWPAQ TNHVQDQNGL FTAAAASTPA WQLSGATGAT INLAYPDQGA LELMSTNNIN  300
GKAQLFQIDD AATAEDVWSA EQQVVHGENN SWGGANGTWD PLFYVPSVLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1420781271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021296118.11e-101ethylene-responsive transcription factor ERF024-like
TrEMBLA0A061G1T07e-98A0A061G1T0_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOY237951e-98(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-13related to AP2 11