PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002635-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family RAV
Protein Properties Length: 385aa    MW: 43731.1 Da    PI: 8.2312
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002635-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.76.9e-0959105254
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                         ++kGV    ++g W ++I+       + +r++lg+f +++eAa a++ a+ kl+
  WALNUT_00002635-RA  59 KFKGVV-PQQNGHWGSQIYA------NhQRIWLGTFRSEKEAAMAYDSAAIKLR 105
                         789996.566889****999......44**********99************98 PP
2B383.81.6e-26185292188
                         EEEE-..-HHHHTT-EE--HHH.HTT...................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                         f+k+ltpsdv+k++rlv+pkk+a ++                   g  +  +++l+++d++ ++W+++++y+++s+++v+t+GW++Fvk++
  WALNUT_00002635-RA 185 FQKELTPSDVGKLNRLVIPKKYAVRYfpyiceslesksttttglsGTAHVDDVELIFYDKQMKQWKFRYCYWRSSQSFVFTRGWNKFVKEK 275
                         99******************************998887777777755555999************************************** PP

                         T--TT-EEEEEE-SS.S CS
                  B3  73 gLkegDfvvFkldgr.s 88 
                         +L++ D+++F+  ++ +
  WALNUT_00002635-RA 276 KLNALDIITFYTCESgE 292
                         ***********654434 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.82E-2058115No hitNo description
SMARTSM003803.1E-1759121IPR001471AP2/ERF domain
PROSITE profilePS5103216.76659115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1559115IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1359115IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.101.4E-31181292IPR015300DNA-binding pseudobarrel domain
CDDcd100172.07E-23184286No hitNo description
SuperFamilySSF1019361.83E-23184292IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-24185293IPR003340B3 DNA binding domain
SMARTSM010193.5E-20185296IPR003340B3 DNA binding domain
PROSITE profilePS5086310.926185309IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEYDASSCTI SCAKILNMPA KTSDSNNSND YYALPASKRM RHDNAVININ APSTTATAKF  60
KGVVPQQNGH WGSQIYANHQ RIWLGTFRSE KEAAMAYDSA AIKLRSGDSQ YRNFPCTDRT  120
AQEPTFQNHY STEAVLNMIR DGSYPSKFAA FLRTQSQNNE NIGICILKQT RIVHGDGHFS  180
CSQLFQKELT PSDVGKLNRL VIPKKYAVRY FPYICESLES KSTTTTGLSG TAHVDDVELI  240
FYDKQMKQWK FRYCYWRSSQ SFVFTRGWNK FVKEKKLNAL DIITFYTCES GEKGKVGETF  300
CFIDVIYNGV DHQSKNCLAE YQGIGDDQSS AQVELELNLG KNVGYEVDYK DDKVSYSKED  360
DQKVRLNMDE KGIRIFGVQL TGIRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-261833046109B3 domain-containing transcription factor NGA1
5os9_B1e-261833046109B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018834509.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-107RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2I4FS830.0A0A2I4FS83_JUGRE; AP2/ERF and B3 domain-containing transcription factor At1g50680-like
STRINGXP_008243686.11e-133(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-107RAV family protein