PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00002686-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

S1Fa-like

Protein Properties

Length: 89aa MW: 10045 Da PI: 10.1029

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00002686-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	137.5	3.1e-43	24	89	5	70
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +eakG+nPGlivllvv glll+flvgny+ly+yaqk+lPPrkkkPvskkk+kre++kqGv++PGe WALNUT_00002686-RA 24 DAEAKGFNPGLIVLLVVVGLLLIFLVGNYVLYMYAQKTLPPRKKKPVSKKKMKRERMKQGVSAPGE 89 68***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	8.0E-4	21	89	No hit	No description
Pfam	PF04689	1.2E-41	25	89	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MDDEYEFADK VPPSFDRVGD MIKDAEAKGF NPGLIVLLVV VGLLLIFLVG NYVLYMYAQK 60 TLPPRKKKPV SKKKMKRERM KQGVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018850185.1	7e-58	PREDICTED: DNA-binding protein S1FA-like
Swissprot	P42553	1e-17	S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBL	A0A2I4H200	2e-56	A0A2I4H200_JUGRE; DNA-binding protein S1FA-like
STRING	Lus10015073	6e-35	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55