PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002764-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family RAV
Protein Properties Length: 350aa    MW: 40530 Da    PI: 9.2876
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002764-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.5e-104592154
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                        +++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ kl+
  WALNUT_00002764-RA 45 TKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAIKLR 92
                        6899996.666899****999......44**********99************98 PP
2B386.32.6e-27167262183
                         EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                         f+k+ltpsdv+k++rlv+p+k+a ++             +g + e++ lt++d+  r W+++++y+k+s+++v+t+GW++Fvk+n+Lk++D
  WALNUT_00002764-RA 167 FQKELTPSDVSKLNRLVIPRKYAIKYfprtsetaednnaEGGTMEDVLLTFYDRLMRPWKFRYCYWKSSQSFVFTRGWNRFVKENHLKSKD 257
                         99***************************999998888855556999******************************************** PP

                         EEEEE CS
                  B3  79 fvvFk 83 
                         +++F+
  WALNUT_00002764-RA 258 TITFY 262
                         ****9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.82E-2345103No hitNo description
PROSITE profilePS5103217.14846101IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-1546102IPR016177DNA-binding domain
PfamPF008471.6E-54692IPR001471AP2/ERF domain
SMARTSM003803.9E-1846107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1646101IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-31164268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-27166268IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-23166262No hitNo description
SMARTSM010192.4E-18167285IPR003340B3 DNA binding domain
PfamPF023625.8E-25167263IPR003340B3 DNA binding domain
PROSITE profilePS5086312.393167284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDEDMLSLIS NDRVNATTED QSDSSSATYA LPARKCARRG SIVFTKFKGV VPQQNGHWGA  60
QIYANHQRIW LGTFKSEKEA AMAYDSAAIK LRSLDSHKNF PWTDITVEEP NFQNLYSAEA  120
VLNMIKDGSY RSKFEEFLRT RSHAETHNGL NLASLQSSGG LMWKQLFQKE LTPSDVSKLN  180
RLVIPRKYAI KYFPRTSETA EDNNAEGGTM EDVLLTFYDR LMRPWKFRYC YWKSSQSFVF  240
TRGWNRFVKE NHLKSKDTIT FYSCDCKEVA KGNHSFYMID FNRVENSGPL VEQSSLQYVG  300
MQLEPTVLEV NRQIDHYVKE KKLDEVKELK RPKLTHDKKT GFRLFGVLII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-2616626813107DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018850320.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_018850321.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_018850322.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_018850323.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_018850324.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-104RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A2I4H2H60.0A0A2I4H2H6_JUGRE; AP2/ERF and B3 domain-containing transcription factor At1g50680-like
STRINGXP_006473975.11e-134(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-105RAV family protein