PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002926-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 240aa    MW: 26557.7 Da    PI: 8.6066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002926-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.8e-213585155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g
  WALNUT_00002926-RA 35 PRYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARNLRG 85
                        68********.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.9E-143585IPR001471AP2/ERF domain
CDDcd000185.66E-193595No hitNo description
SMARTSM003803.9E-373699IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-323694IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-233695IPR016177DNA-binding domain
PROSITE profilePS5103223.7233693IPR001471AP2/ERF domain
PRINTSPR003679.5E-113748IPR001471AP2/ERF domain
PRINTSPR003679.5E-115975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRRGRGAPSR KTVAVEAPGV PDTAGSALRN TGKEPRYRGV RKRPWGRFAA EIRDPWKKTR  60
VWLGTFDSAE DAARAYDAAA RNLRGPKAKT NFPLSPSSYF SPLNPNQSHL NHQNCALLDH  120
HRLYDMNDGF QEHQIVDPQR PASSSMSSTV ESFSGPRPPP LQSARAFAAA PRRHPKPPML  180
IPEDCHSDCD SSSSVVDDDV DIASSSCRKR PLPFDLNFPP PQLDEVDFVG DDLRCTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-213398268ATERF1
3gcc_A4e-213398268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812114.11e-177PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_018812122.11e-177PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9LDE48e-56ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A2I4DY811e-175A0A2I4DY81_JUGRE; ethylene-responsive transcription factor 3-like
STRINGXP_002531192.11e-74(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.13e-29ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]