PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003216-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 553aa    MW: 64690.1 Da    PI: 6.4261
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003216-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix902.7e-28100185187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e g++rs k+Ckek+enl k+ykk+ke++++r+    +++++f+qlea
  WALNUT_00003216-RA 100 RWPRQETLTLLEIRSRLDSKFKETNQKGPLWDEVSRLMaEEYGYQRSGKKCKEKFENLYKYYKKTKERKSGRQ--GGKHYRFFRQLEA 185
                         8*************************************7788****************************984..5557*******85 PP
2trihelix55.81.2e-17398486186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykk.ikegekkr.tsessstcpyfdqle 86 
                         rWt+ ev  Lie+r+++e r+++g+ l++ lWee++ km + g+ rs+++ kekw+ ++ +y k i e +kkr ++ + +t +yf+q +
  WALNUT_00003216-RA 398 RWTELEVSSLIELRTSLELRFQDGEhLDESLWEEIATKMGSLGYDRSAVEYKEKWQHISIYYNKaIMECNKKRkEDLDLRTGSYFQQFD 486
                         8*********************975499**********************************662667777774578889999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.92293158IPR017877Myb-like domain
SMARTSM007170.5197160IPR001005SANT/Myb domain
PfamPF138372.3E-2099186No hitNo description
CDDcd122031.84E-21100165No hitNo description
SMARTSM007175395458IPR001005SANT/Myb domain
PROSITE profilePS500906.47395456IPR017877Myb-like domain
CDDcd122031.89E-18397462No hitNo description
PfamPF138376.5E-13397485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MGDQYGLPDF RQFMVGRTHF PSIAQPTESF FPQRNAAAPL HYEPIMVGEV LPRGLVGFGH  60
DSPSSVTPTT ATATSSAAAT LCGSVQMDSG WMGYDMENTR WPRQETLTLL EIRSRLDSKF  120
KETNQKGPLW DEVSRLMAEE YGYQRSGKKC KEKFENLYKY YKKTKERKSG RQGGKHYRFF  180
RQLEAIYGEA SNHATVSDTH LARNSLPNYQ IPHNVINQEN QEVDLQTPRL SDQSLSFSNS  240
SEFETSSSEH RMNYQSMEKQ IGMNEIRPER YTRNKKNLKA KIEDFVDSQM RKIMDTQEVW  300
MDRLLKTIED REQERVFREE EWRKQEAARF DQEVHHIWTK EREWVEARDA ALMEALKKYI  360
GKGLEVSQSA EPMAVETRSH TENQDENGKE ITYINNSRWT ELEVSSLIEL RTSLELRFQD  420
GEHLDESLWE EIATKMGSLG YDRSAVEYKE KWQHISIYYN KAIMECNKKR KEDLDLRTGS  480
YFQQFDYYLG QEVSKQRPES IGLQLMNEGS LPPSSSNDRD QADVHRHGFR HEGENLWEKY  540
GVRYCKGKTS KFN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018853428.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A2I4HB900.0A0A2I4HB90_JUGRE; trihelix transcription factor PTL-like
STRINGPOPTR_0008s02580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-107Trihelix family protein