PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00003252-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

GRAS

Protein Properties

Length: 748aa MW: 81620.2 Da PI: 6.0613

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00003252-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	338.9	9e-104	387	747	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ve+L+++Ae +++g+ laq +Larl+++ sp g+p+qR+a+yf+eAL+ l+ ++ +++lp s+ ++ + + ++ a+k fse+sP+l+ WALNUT_00003252-RA 387 VEQLFKAAELIETGNPVLAQGILARLNHQLSPIGKPFQRAAFYFKEALQLLLQM--NTGSNSLPLSQPPPISLIYKIGAYKSFSEASPVLQ 475 799*********************************************9998..8888999************************ PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 f+++t+Nqa+lea+eg++r+H+iDfdi+ G+QW++++q+La R++g+p l+iT++ sp+++++ el t+e+L++fA+ +++pfef+++ WALNUT_00003252-RA 476 FANFTCNQALLEALEGCDRIHVIDFDIGFGGQWASFMQELALRSGGSPALKITAFTSPSPHDELELGFTQENLKHFASDINIPFEFEIVSL 566 ************************************************************************************966 PP GRAS 184 krledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 ++l++ + Lrv++ Ea+aVnl + ++++ ++sl+ vL++vk+lsPk+vv ++ +d+++ +F +++++a+++y+ l++sl+a WALNUT_00003252-RA 567 ESLNSGsWPVPLRVSETEAIAVNLPIG--SFPNYPLSLPL----VLRFVKQLSPKIVVSLDRGCDRTDVPFPHHIIHAVQTYMGLLESLDA 651 66665524789**********95..56656888888....*****************************************77 PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 + ++ +k+Er +l++ i+++v+ ++++ + + W++ + ++GF+p+++s+++++qa++++++++++g+ ve+++ s+vl+W++ WALNUT_00003252-RA 652 V-NMNLDALQKIERYVLQPGIEKIVTSRHRS----PDRTSPWKNIFLSSGFSPLTFSNFTESQAECVVQRTPVRGFYVEKKQSSIVLCWQR 737 6.4567999*************99998....88899*********************************************** PP GRAS 365 rpLvsvSaWr 374 ++L+svSaW+ WALNUT_00003252-RA 738 KELISVSAWK 747 *******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.716	360	727	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-101	387	747	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MKAMPLTFEE FQGKGVLDFS TTASSDLLPQ LHRRHHQRQQ PPQKWHTGKE NCYVGTEPTS 60 VLDTRRSPSP PTSTSTLSSS LGNGGGGGSS GSTDTTNNTT GVAATAASAA AASENPSHTG 120 LDIGEKCGLG MEDWEGVLSE SSPGHEQSIL RLIMGDIEDP SVGLNKLLQS GSIGSHQDIE 180 FNAGFGIVDQ ATGFGFEPIS TAGSVANIDP SLPIPSSEFP FCNARLGSVS TPNPNPNPFF 240 SAPASNLLPV SLSSGVFHQQ QLQAIEAADE KPQIFNPQFM INQNQAHYGQ NPALFMPLTY 300 TQLQEHHLFS PPPAKRLNSG SLGANCQIPK VPFSDSGQEL SVRRQQQQQH YSLRQPLAVE 360 AGDAARQKMM HDELASQQQQ LLQQAIVEQL FKAAELIETG NPVLAQGILA RLNHQLSPIG 420 KPFQRAAFYF KEALQLLLQM NTGSNSLPLS QPPPISLIYK IGAYKSFSEA SPVLQFANFT 480 CNQALLEALE GCDRIHVIDF DIGFGGQWAS FMQELALRSG GSPALKITAF TSPSPHDELE 540 LGFTQENLKH FASDINIPFE FEIVSLESLN SGSWPVPLRV SETEAIAVNL PIGSFPNYPL 600 SLPLVLRFVK QLSPKIVVSL DRGCDRTDVP FPHHIIHAVQ TYMGLLESLD AVNMNLDALQ 660 KIERYVLQPG IEKIVTSRHR SPDRTSPWKN IFLSSGFSPL TFSNFTESQA ECVVQRTPVR 720 GFYVEKKQSS IVLCWQRKEL ISVSAWKC

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MKAMPLTFEE FQGKGVLDFS TTASSDLLPQ LHRRHHQRQQ PPQKWHTGKE NCYVGTEPTS  60
VLDTRRSPSP PTSTSTLSSS LGNGGGGGSS GSTDTTNNTT GVAATAASAA AASENPSHTG  120
LDIGEKCGLG MEDWEGVLSE SSPGHEQSIL RLIMGDIEDP SVGLNKLLQS GSIGSHQDIE  180
FNAGFGIVDQ ATGFGFEPIS TAGSVANIDP SLPIPSSEFP FCNARLGSVS TPNPNPNPFF  240
SAPASNLLPV SLSSGVFHQQ QLQAIEAADE KPQIFNPQFM INQNQAHYGQ NPALFMPLTY  300
TQLQEHHLFS PPPAKRLNSG SLGANCQIPK VPFSDSGQEL SVRRQQQQQH YSLRQPLAVE  360
AGDAARQKMM HDELASQQQQ LLQQAIVEQL FKAAELIETG NPVLAQGILA RLNHQLSPIG  420
KPFQRAAFYF KEALQLLLQM NTGSNSLPLS QPPPISLIYK IGAYKSFSEA SPVLQFANFT  480
CNQALLEALE GCDRIHVIDF DIGFGGQWAS FMQELALRSG GSPALKITAF TSPSPHDELE  540
LGFTQENLKH FASDINIPFE FEIVSLESLN SGSWPVPLRV SETEAIAVNL PIGSFPNYPL  600
SLPLVLRFVK QLSPKIVVSL DRGCDRTDVP FPHHIIHAVQ TYMGLLESLD AVNMNLDALQ  660
KIERYVLQPG IEKIVTSRHR SPDRTSPWKN IFLSSGFSPL TFSNFTESQA ECVVQRTPVR  720
GFYVEKKQSS IVLCWQRKEL ISVSAWKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-37	386	747	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681924	3e-39	LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBank	LN713265	3e-39	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018853819.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A2I4HCD6	0.0	A0A2I4HCD6_JUGRE; scarecrow-like protein 22
STRING	EOX96296	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3183	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-146	GRAS family protein