PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00003351-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 1406aa MW: 158017 Da PI: 6.9962

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00003351-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.4	3.7e-26	123	225	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ +e+ +r+ +t+Cka+++vk++ dgkw+++ WALNUT_00003351-RA 123 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprarqnkqdSENVTGRRSCAKTDCKASMHVKRRADGKWVIH 213 5*****************************************9999999988765544444448999****************** PP FAR1 80 kleleHnHelap 91 ++++eHnHel p WALNUT_00003351-RA 214 SFVKEHNHELLP 225 *******975 PP
2	FAR1	86.7	3.5e-27	526	613	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk++ dgkw ++++ +eHnHel p WALNUT_00003351-RA 526 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSG---SSRRPSVKKTDCKASMHVKRRPDGKWIIHEFLKEHNHELLP 613 5**************************************999888...7788889*****************************975 PP
3	FAR1	74.9	1.6e-23	1037	1122	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+eYA++vGF +++++s++sk++g++++ + Cs+ g+++ ++++ + r+ +t+Cka +++k++ dgkw v+++ +eHnHe+ WALNUT_00003351-RA 1037 SFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRASSTT----VQARPCIKTDCKAGMHIKRMADGKWIVHSFIKEHNHEI 1121 5**************************************998877....999********************************9 PP FAR1 90 a 90 + WALNUT_00003351-RA 1122 C 1122 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-24	123	225	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.3E-24	526	613	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9	683	719	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-4	693	716	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.6E-7	694	721	IPR006564	Zinc finger, PMZ-type
Pfam	PF03101	7.1E-21	1037	1122	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1406 aa Download sequence Send to blast
MEEQMNLKLL TQFRSTKQVS ECEHEQNVSR TKKGQTLPDS RLPSGDHDKE DEPNAIDNIL 60 NGDEKLHNGD VEGENMVDVG MDVRVEDGGD LNSPTVDMVV FKEDTNLEPL SGMEFESHGE 120 AYSFYQEYAR SMGFNTAIQN SRRSKTSREF IDAKFACSRY GTKREYDKSF NRPRARQNKQ 180 DSENVTGRRS CAKTDCKASM HVKRRADGKW VIHSFVKEHN HELLPAQAVS EQTRKMYAAM 240 ARQFAEYKNA ELLGVVACHP KRESQDDNTV ITFRVQEFER SQDFFVIYNE MKSEISCICG 300 LYEYKEGSLS LDSFSYAMGA LDEAFGTCVN MNNSSKSLTE AGTSDTHGLL CIEEDNQSRS 360 TGKTNKKKNP TKKRKVNSES DVMTVGAQES LQQMDKVSSR AVTLDSYYST QQGMQGMVQL 420 NLMAPTRDNY YGNQQTIQGL GQLNSIAPSH DGYYSAPQSM HGLGQMDFFR TPTGFTYGIR 480 DDPNVRAAQD GGAVSSSKSD VIAFEGDTDF EPRNGIEFES HEAAYSFYQE YAKSMGFTTS 540 IKNSRRSKKS KEFIDAKFAC SRYGVTPESD SGSSRRPSVK KTDCKASMHV KRRPDGKWII 600 HEFLKEHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS ERTRKMYFQV EVLGVVGCHP 660 KKESDDGTTT TFRVQDCEKG EYFMVTWNEI KLEVSCFCRL FEYRGFLCRH AMIVLQICGL 720 SSIPPNYILK RWTKDAKSRQ SKVEGTERMQ TRVQRYNDLC KQAIELSEEG SLSEESYSIA 780 FRTLVEALKN CVNVNNSTIN AAETSSNAHG LREEEENQRS LRAKTSKRKN TYKKRKVPSE 840 PDAIVVEAQE SLQPMDGLSS DGMTLSGYYG AQQNVQGLVQ LNLMEPPHDG YYVNQHSMQG 900 LGQLNSLAPS HDGFFGAQQS IHGLGQLDFR PPTNFSYSLQ IDLELPSCKQ EKLGIGSNAY 960 IDDVDGAVGV QVEEHDVNSR TPSEHVEEVH GLIASGSAIS FCNEDDFNSV GMTAVNKGAN 1020 NEPHSGLEFE SKEAAYSFYR EYARSVGFGI TIKASRRSKK SGKFIDIKIA CSRFGSKRAS 1080 STTVQARPCI KTDCKAGMHI KRMADGKWIV HSFIKEHNHE ICHYDFYNSV RGHNKQSDVV 1140 ACQKKGLQLA LDEGDKFEAE VLGVVSCRLQ KEKGSLSEET YHIAFQALEE VLKHCVGANN 1200 SVRSVSEPNT MAIHRFLDVD EENHNSSMAK LSKKKKSYKK RKGQSKPEGI TIGLQESCQQ 1260 MEQMNSRPHN LDNCYIPQQE VQGVELSSRA PTLDGYFDAQ QSIHALGQLN SSSPLRDDFY 1320 GNQQCIQGMG QLHSVAARLG QYGTQQSMQG LVVLHGQLSY KAPAIHGCFD IQDNLQDMEH 1380 SIGSSQFLNN APKHLHNKQL SRQLER

Sequence ? help Back to Top

Protein Sequence Length: 1406 aa Download sequence Send to blast

MEEQMNLKLL TQFRSTKQVS ECEHEQNVSR TKKGQTLPDS RLPSGDHDKE DEPNAIDNIL  60
NGDEKLHNGD VEGENMVDVG MDVRVEDGGD LNSPTVDMVV FKEDTNLEPL SGMEFESHGE  120
AYSFYQEYAR SMGFNTAIQN SRRSKTSREF IDAKFACSRY GTKREYDKSF NRPRARQNKQ  180
DSENVTGRRS CAKTDCKASM HVKRRADGKW VIHSFVKEHN HELLPAQAVS EQTRKMYAAM  240
ARQFAEYKNA ELLGVVACHP KRESQDDNTV ITFRVQEFER SQDFFVIYNE MKSEISCICG  300
LYEYKEGSLS LDSFSYAMGA LDEAFGTCVN MNNSSKSLTE AGTSDTHGLL CIEEDNQSRS  360
TGKTNKKKNP TKKRKVNSES DVMTVGAQES LQQMDKVSSR AVTLDSYYST QQGMQGMVQL  420
NLMAPTRDNY YGNQQTIQGL GQLNSIAPSH DGYYSAPQSM HGLGQMDFFR TPTGFTYGIR  480
DDPNVRAAQD GGAVSSSKSD VIAFEGDTDF EPRNGIEFES HEAAYSFYQE YAKSMGFTTS  540
IKNSRRSKKS KEFIDAKFAC SRYGVTPESD SGSSRRPSVK KTDCKASMHV KRRPDGKWII  600
HEFLKEHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS ERTRKMYFQV EVLGVVGCHP  660
KKESDDGTTT TFRVQDCEKG EYFMVTWNEI KLEVSCFCRL FEYRGFLCRH AMIVLQICGL  720
SSIPPNYILK RWTKDAKSRQ SKVEGTERMQ TRVQRYNDLC KQAIELSEEG SLSEESYSIA  780
FRTLVEALKN CVNVNNSTIN AAETSSNAHG LREEEENQRS LRAKTSKRKN TYKKRKVPSE  840
PDAIVVEAQE SLQPMDGLSS DGMTLSGYYG AQQNVQGLVQ LNLMEPPHDG YYVNQHSMQG  900
LGQLNSLAPS HDGFFGAQQS IHGLGQLDFR PPTNFSYSLQ IDLELPSCKQ EKLGIGSNAY  960
IDDVDGAVGV QVEEHDVNSR TPSEHVEEVH GLIASGSAIS FCNEDDFNSV GMTAVNKGAN  1020
NEPHSGLEFE SKEAAYSFYR EYARSVGFGI TIKASRRSKK SGKFIDIKIA CSRFGSKRAS  1080
STTVQARPCI KTDCKAGMHI KRMADGKWIV HSFIKEHNHE ICHYDFYNSV RGHNKQSDVV  1140
ACQKKGLQLA LDEGDKFEAE VLGVVSCRLQ KEKGSLSEET YHIAFQALEE VLKHCVGANN  1200
SVRSVSEPNT MAIHRFLDVD EENHNSSMAK LSKKKKSYKK RKGQSKPEGI TIGLQESCQQ  1260
MEQMNSRPHN LDNCYIPQQE VQGVELSSRA PTLDGYFDAQ QSIHALGQLN SSSPLRDDFY  1320
GNQQCIQGMG QLHSVAARLG QYGTQQSMQG LVVLHGQLSY KAPAIHGCFD IQDNLQDMEH  1380
SIGSSQFLNN APKHLHNKQL SRQLER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018854995.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Swissprot	Q9SWG3	1e-117	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A0B0NR12	0.0	A0A0B0NR12_GOSAR; Far-red impaired response 1-like protein
STRING	VIT_03s0017g01810.t01	1e-146	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-101	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]