PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003515-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 472aa    MW: 50196.2 Da    PI: 8.2248
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003515-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.44.2e-124873227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        +++ C +++rtG+C yG+rC+F+H++
  WALNUT_00003515-RA 48 DEADCIYYLRTGFCGYGPRCRFNHPR 73
                        6799********************96 PP
2zf-CCCH39.11.2e-1294118327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C++++rtGtCk+G++Ck++H++
  WALNUT_00003515-RA  94 QPVCQYYMRTGTCKFGASCKYHHPR 118
                         689********************96 PP
3zf-CCCH36.48.9e-12139163327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++ +tG+Ck+G++CkF+H++
  WALNUT_00003515-RA 139 EKECSYYVKTGQCKFGATCKFHHPQ 163
                         689********************97 PP
4zf-CCCH37.83.3e-12298324127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++++rtG Ck+G++C+++H+p
  WALNUT_00003515-RA 298 PGQPECQHYMRTGDCKFGSSCRYHHPP 324
                         5789*********************97 PP
5zf-CCCH28.23.2e-09343366326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++C ++a+ G Ck+G  Ck+ H+
  WALNUT_00003515-RA 343 APPCVHYAQRGVCKFGLACKYDHS 366
                         689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.1E-54673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3054674IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-94873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-65074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-55273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.90191119IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-791118IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-1094118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-694119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-596118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.38136164IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6137164IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4142162IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.361297325IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5301324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5303324IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-6340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601340368IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-6343366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-5344370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MERYGRATEG SQSDLSQEWT APVPEIGLEV PMWQLGLGGA DSYPERPDEA DCIYYLRTGF  60
CGYGPRCRFN HPRDRGTVIG AARPGGEYPE RVGQPVCQYY MRTGTCKFGA SCKYHHPRQG  120
GESTPVQLNY YGYPLRLGEK ECSYYVKTGQ CKFGATCKFH HPQPAGIQVP AVSLAPPIAA  180
MPTPTLHPGV HSSSVPSSQQ YGVVVARPPL LPGSYVQSPY GHVLLPSMVP FPGWSPYPAP  240
MSPVPSPNSQ PTVGSGQLYG MTPLYPGTPT YTGTYQSLPS SVGPSSSSQK EYSLPERPGQ  300
PECQHYMRTG DCKFGSSCRY HHPPELVASK TNSSIGLPLR PGAPPCVHYA QRGVCKFGLA  360
CKYDHSLGTL SYSSSASSLA DMQVAPYPVG SSIGTLAPSS SSSELRPEFI SGSSKDPVSS  420
RMSSSMSTSS GSVGSTFSKS EPIPHLTIEQ SAQGSCPSTG SSSGGTGARS SN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018840631.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN31e-167C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2I4G9R40.0A0A2I4G9R4_JUGRE; zinc finger CCCH domain-containing protein 58-like
STRINGEMJ240040.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-132C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]