PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003676-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 236aa    MW: 25931.4 Da    PI: 7.9732
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003676-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000117496123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  WALNUT_00003676-RA 74 YTCTFCRREFRSAQALGGHMNVH 96
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-671101No hitNo description
SMARTSM003550.00667496IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-57497IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.82474101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAAELGLLSL TQLQRLAQSQ HQHYQLNPSL TRPSAGSWMW NPKQANEEDD SWEVRAFAED  60
TGNASGTTWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR VRLNQPQPNS NNPISSSSST  120
TSSFIIPSTQ EYYSSNGGLC RLYQSPNPNG AFTSRVSVNA SHFESPSTLL SISVPSPPNN  180
LMPPCSPSIS YASGSPGTNS PRFYSSKAKE TSPTTDNAND QDLDLELRLG QRPMSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-136996229superman protein
2l1o_A2e-136996229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824651.11e-173PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A2I4EZ411e-172A0A2I4EZ41_JUGRE; transcriptional regulator SUPERMAN
STRINGPOPTR_0001s02530.14e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.16e-36C2H2 family protein