PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003691-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 309aa    MW: 34470.4 Da    PI: 4.9964
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003691-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.5e-21163213255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka+++a+ kl+g
  WALNUT_00003691-RA 163 HYRGVRRRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDQAAFKLRG 213
                         8********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.76E-31162221No hitNo description
Gene3DG3DSA:3.30.730.102.1E-32162222IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-23163222IPR016177DNA-binding domain
PROSITE profilePS5103224.553163221IPR001471AP2/ERF domain
SMARTSM003803.8E-37163227IPR001471AP2/ERF domain
PfamPF008476.9E-15163213IPR001471AP2/ERF domain
PRINTSPR003671.6E-13164175IPR001471AP2/ERF domain
PRINTSPR003671.6E-13203223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MATSYEDVSS ALQFIKLHLL GEVSPVPLPC LSNSDNEISS FESCSQTSGS MPVSDFFSYN  60
DLFEFPKIMD LTASISLDSN NDFFESESKP NSHTSTSYSP QSIGNCFAFE SRPQTNRTKP  120
SLMISLPIKS TTKLLQSGDH NQQPDPSSVP SVVQNASFEE EKHYRGVRRR PWGKYAAEIR  180
DPNRRGSRVW LGTFDTAIEA AKAYDQAAFK LRGSKAILNF PLEAGKSETM KKVDGRKRYR  240
VEEEEEEEVV LKKERSMETE DTASTSSSRN IPLTPSNWTA VLDGDLEGIF NVPPLSPHPP  300
FGYSQLMVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-30162228470ATERF1
3gcc_A7e-30162228470ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839490.10.0PREDICTED: ethylene-responsive transcription factor ERF105-like
TrEMBLA0A2I4G6H90.0A0A2I4G6H9_JUGRE; ethylene-responsive transcription factor ERF105-like
STRINGevm.model.supercontig_89.428e-70(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-67ethylene responsive element binding factor 5