PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003692-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 329aa    MW: 36517.6 Da    PI: 8.0979
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003692-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-20183233255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+G+r+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka+++a+ kl+g
  WALNUT_00003692-RA 183 HYRGIRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDRAAFKLRG 233
                         8********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-32182242IPR001471AP2/ERF domain
CDDcd000183.50E-31182241No hitNo description
PROSITE profilePS5103224.039183241IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-22183243IPR016177DNA-binding domain
SMARTSM003802.0E-38183247IPR001471AP2/ERF domain
PfamPF008479.0E-14183233IPR001471AP2/ERF domain
PRINTSPR003671.7E-13184195IPR001471AP2/ERF domain
PRINTSPR003671.7E-13223243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
METSNEDVSS ALYLIKLHLL GEVSPVALPC LSSSDIEVSS SESRSQSLCS QTSSSDSPMV  60
VTNFSSSNDL FDSFTFQHNE TDYFGFRKSM GLATPKSHHS NNDFFQFEAN PKTQTSISYS  120
QSTRDCFALE SKPQTNRTKP SLVISLPSKS NTKWIQIGNH NHQPDASSLS SVEQNASFEA  180
KKHYRGIRQR PWGKYAAEIR DPNRRGSRVW LGTFDTAIEA AKAYDRAAFK LRGSKAILNF  240
PLEVGNSDTT PEAAERKRRR EEEEVKVVAV KKERSTESKN TTGTSSMDVP LTPSSWKAVW  300
DGDLQGIFIP PLSPLSPHPS LGYPQLTVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-31182244163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255259RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839501.10.0PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLA0A2I4G6H00.0A0A2I4G6H0_JUGRE; ethylene-responsive transcription factor 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.15e-48ethylene responsive element binding factor 5