PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003701-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HD-ZIP
Protein Properties Length: 299aa    MW: 33595.6 Da    PI: 8.163
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003701-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.7e-19135189256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++k+q  +Le+ F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  WALNUT_00003701-RA 135 RKKLRLSKDQSAILEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 189
                         788899***********************************************98 PP
2HD-ZIP_I/II129.81.1e-41135224191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlsk+q+++LE+sF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l
  WALNUT_00003701-RA 135 RKKLRLSKDQSAILEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELR-AL 224
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.2E-341109IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.3E-18122185IPR009057Homeodomain-like
SuperFamilySSF466891.24E-18127192IPR009057Homeodomain-like
PROSITE profilePS5007117.346131191IPR001356Homeobox domain
SMARTSM003897.2E-17133195IPR001356Homeobox domain
PfamPF000462.8E-16135189IPR001356Homeobox domain
CDDcd000861.86E-15135192No hitNo description
PRINTSPR000312.0E-5162171IPR000047Helix-turn-helix motif
PROSITE patternPS000270166189IPR017970Homeobox, conserved site
PRINTSPR000312.0E-5171187IPR000047Helix-turn-helix motif
SMARTSM003402.9E-27191234IPR003106Leucine zipper, homeobox-associated
PfamPF021832.4E-11191225IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVEKEDLGLS LSLSFPQNNR SLQLNLRPSL LPSSAASPSG FNLPKPSWNE AAFPSSDRNS  60
ESCRAETRSF LRGIDVNRLP SSGDCEEEAG VSSPNSTISS LSGKRSEREA NGEELEIERD  120
CSRGASDEED GETSRKKLRL SKDQSAILED SFKEHNTLNP KQKLALAKQL GLRPRQVEVW  180
FQNRRARTKL KQTEVDCEFL KRCCENLTDE NRRLQKEVQE LRALKLSPQF YMQMTPPTTL  240
TMCPSCERVA VPVCSSATVD TRPHHQVVST HARHVSINPW ATTPGPIARR PFDSHHQRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133139SRKKLRL
2183191RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839633.10.0PREDICTED: homeobox-leucine zipper protein HAT4-like
SwissprotP466011e-109HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A2I4G6W70.0A0A2I4G6W7_JUGRE; homeobox-leucine zipper protein HAT4-like
STRINGEOY242631e-163(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.11e-95Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]