PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00003724-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

WRKY

Protein Properties

Length: 325aa MW: 36367.4 Da PI: 7.1646

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00003724-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.7	4.2e-32	165	223	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers +d ++v++tYeg+H+h+ WALNUT_00003724-RA 165 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSCDDSSIVVTTYEGQHKHP 223 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	1.3E-95	1	321	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	6.9E-34	150	225	IPR003657	WRKY domain
SuperFamily	SSF118290	9.94E-29	157	225	IPR003657	WRKY domain
PROSITE profile	PS50811	32.501	160	225	IPR003657	WRKY domain
SMART	SM00774	7.3E-37	165	224	IPR003657	WRKY domain
Pfam	PF03106	5.6E-26	166	223	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEKKQELKTE NSMANSAFSD EIPGSLSLPS IFDMPCDQSH DHQKGLSLGF MDMLSIPADY 60 NPSLFDLFST PTMMPQPQVQ PQQEQPLPSP ASTVPESSEV VNTPATPNSS SISSSSNEGQ 120 TKAGGEEEDQ DQEKTKKQLK PKKKNQKRQR EPRFAFMTKS EVDHLDDGYR WRKYGQKAVK 180 NSPYPRSYYR CTTAGCGVKK RVERSCDDSS IVVTTYEGQH KHPCPVTPRG GIGIATEAAG 240 FSTFASPFVV PQPQYQQQQH PAYIYSLQPR LNVSTSTTNL NPSFPSFVQD QRRFGTSSAT 300 FLRDHGLLQD IVPSQTRKDQ FKEEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-29	155	225	7	77	Probable WRKY transcription factor 4
2lex_A	3e-29	155	225	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018825772.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	5e-63	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A2I4F297	0.0	A0A2I4F297_JUGRE; WRKY transcription factor
STRING	EOY06768	1e-112	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	8e-57	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]