PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00003889-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

BBR-BPC

Protein Properties

Length: 315aa MW: 35403.1 Da PI: 10.0164

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00003889-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	354.4	2.4e-108	1	315	1	301
GAGA_bind 1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernka 73 mdd ++e r+k yy+ ++ ++l +++++ms+i+erda+i+ern+a+sek++a+a+rd+a++qrd+ala+r+ a WALNUT_00003889-RA 1 MDDGRKHEngRHKMdYYReshspwnmvpqhqlKEpNALV--MNKKIMSIISERDAAIHERNAAISEKNEALAARDEALHQRDEALAQRDSA 89 666655555899988998999999999765552234555..99********************************************** PP GAGA_bind 74 lverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekka 164 l+erdn+++al++++n++ + p g ++ +gtk +++l + + +l++ +++++e ++++a+pi+ a+ea ++++ k+++ +k+ +k++ WALNUT_00003889-RA 90 LMERDNAFAALQVRDNTM--NFPLGGGIQRGTKRMHHLSN-HPDNLAEAPYNTKEAQITNAFPITVIASEAVRSHQAKRTKDNKSVCSKQS 177 **********9985..56889999****9988.669****************999999999888887777777666666 PP GAGA_bind 165 kkkkk...ksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252 k++++ +e+ +++ ++s+ ++ ++e++ +d++ln v +Dest+P PvCsCtG+lrqCYkWGnGGWqS+CCtt +S+yPLP+++++r+ WALNUT_00003889-RA 178 KSPRNgkkLGEDLNRQ--AASVGTKYRSEWDGQDVGLNLVIFDESTMPLPVCSCTGVLRQCYKWGNGGWQSSCCTTRMSMYPLPQMPNKRH 266 6555400033333333..3333489************************************************************** PP GAGA_bind 253 aRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 aR++grKmS+++f++lL+++aa G+dls p+DLkd WA+HGtn+++ti+ WALNUT_00003889-RA 267 ARVGGRKMSGSVFTRLLSRVAAAGHDLSLPLDLKDSWARHGTNRYITIK 315 **********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.4E-141	1	315	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.2E-97	1	315	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MDDGRKHENG RHKMDYYRES HSPWNMVPQH QLKEPNALVM NKKIMSIISE RDAAIHERNA 60 AISEKNEALA ARDEALHQRD EALAQRDSAL MERDNAFAAL QVRDNTMNFP LGGGIQRGTK 120 RMHHLSNHPD NLAEAPYNTK EAQITNAFPI TVIASEAVRS HQAKRTKDNK SVCSKQSKSP 180 RNGKKLGEDL NRQAASVGTK YRSEWDGQDV GLNLVIFDES TMPLPVCSCT GVLRQCYKWG 240 NGGWQSSCCT TRMSMYPLPQ MPNKRHARVG GRKMSGSVFT RLLSRVAAAG HDLSLPLDLK 300 DSWARHGTNR YITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018841398.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_018841399.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_018841400.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_018841401.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_018841402.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_018841403.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_018841404.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Swissprot	Q8S8C6	1e-133	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A2I4GBW9	0.0	A0A2I4GBW9_JUGRE; protein BASIC PENTACYSTEINE4-like
STRING	XP_004148546.1	0.0	(Cucumis sativus)
STRING	XP_004172323.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6974	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-135	basic pentacysteine 4