PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00003907-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 303aa MW: 33680.8 Da PI: 6.5194

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00003907-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.6	1.1e-08	23	72	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL ++ ++ +K++K++iL +++ +k+L WALNUT_00003907-RA 23 RKTQKAGREKLRRDRLNEQFVELGNVVDPS----RPKNDKSTILVDTIQVLKDL 72 5677788******************997....79************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.576	22	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-12	22	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.14E-12	22	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.51E-5	23	76	No hit	No description
Pfam	PF00010	1.4E-6	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-4	28	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MKKNTLTNYL CSQRYEVDCI SARKTQKAGR EKLRRDRLNE QFVELGNVVD PSRPKNDKST 60 ILVDTIQVLK DLASQINKLK AECSTLTEES HEAFLLSICL DLMQEKNDLR EEKASLKSDI 120 ENLNVQCQQR LGAMFPWAAI DHSVVMGPPS YQFPVPMPMP PGPIPMHPSM QPYPFFGNQN 180 PGLIPNPCST FVPYVPPNTS VERSARHASP RNRSPILDKQ DSRCKSSGKS KTGESEDSDN 240 VATNLELKTP GSTEDQDLSP EPKNSRKRWR EENSVTEGSS SSRSSSSVQD SSSNIVVGGI 300 ADE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018841437.1	1e-179	PREDICTED: transcription factor bHLH121-like isoform X1
Refseq	XP_018841438.1	1e-179	PREDICTED: transcription factor bHLH121-like isoform X1
Swissprot	Q9LT23	4e-92	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A2I4GC01	1e-178	A0A2I4GC01_JUGRE; transcription factor bHLH121-like isoform X1
STRING	EOX97758	1e-118	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2282	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	2e-78	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]