PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004134-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 76aa    MW: 8588.47 Da    PI: 9.6618
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004134-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.2e-101558344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT+   +++ +a +++ ++   +W  +a+ +g g+++++++ ++
  WALNUT_00004134-RA 15 SWTPKQNKQFEQALALYDKDtpdRWQNVAKAVG-GKSAEEVRRHY 58
                        7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.65E-13960IPR009057Homeodomain-like
PROSITE profilePS5129310.7191166IPR017884SANT domain
SMARTSM007171.0E-71264IPR001005SANT/Myb domain
PfamPF002491.7E-81558IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-51563IPR009057Homeodomain-like
CDDcd001673.29E-61658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MASSLFSSSS GSNSSWTPKQ NKQFEQALAL YDKDTPDRWQ NVAKAVGGKS AEEVRRHYEA  60
AHEESKAIMK PKHERH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-21668163RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821513.12e-41PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1731e-22RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2I4EQ465e-40A0A2I4EQ46_JUGRE; protein RADIALIS-like 4
STRINGXP_008241690.11e-28(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-23RAD-like 1