PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004368-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 300aa    MW: 33446.2 Da    PI: 6.6759
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004368-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.9e-36241152102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++++isw+++g++f+v++++ fak++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+
  WALNUT_00004368-RA  24 FLTKTYQLVDDHTINDVISWNNDGSTFIVWNPTVFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRRGEKQ 105
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  WALNUT_00004368-RA 106 LLREIQRRKI 115
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.1E-5520113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.22E-3521113IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-3821113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.3E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MALPVEQNGE STSGDSQRSL PTPFLTKTYQ LVDDHTINDV ISWNNDGSTF IVWNPTVFAK  60
DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFSNECFR RGEKQLLREI QRRKITSPAV  120
AAPAPLTIAA VPTSKPLTSP SNSGEDQGMS TNSSSTTAPA DLIDENERLR KENVQLSKEL  180
AEVKSLCNNI FALMSNFANN NPSESAEKQL DLLPAKRFAG EGFTEAETSA RLFGVAIGRK  240
RAREGDGAAA EHETELRLQQ PGAGVAKSEP LDCQNDADDR KSTWRKHCHW DNRNNQSVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25111312129Heat shock factor protein 1
5d5v_B2e-25111312129Heat shock factor protein 1
5d5v_D2e-25111312129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830717.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9SCW44e-90HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A2I4FGF40.0A0A2I4FGF4_JUGRE; heat stress transcription factor B-2b-like
STRINGGLYMA20G29610.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-91heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]