PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00004376-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 888aa MW: 101888 Da PI: 6.2932

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00004376-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.9	1.3e-26	74	160	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 kfYn+YA+ vGFsvrk+ ++sk +g++++r+f+Cs+eg+r+++k++ + +++r+etrtgC a++ ++++ dgk++vt++e++HnH+ WALNUT_00004376-RA 74 KFYNKYARLVGFSVRKDWVNRSKVHGQVVSRKFTCSREGYRRKDKRD-INVKKHRKETRTGCLAHMIITRQPDGKYQVTHFEEQHNHD 160 6*****************************************999.99999********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-24	74	160	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.2E-27	284	378	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.225	564	600	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.4E-5	574	599	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.5E-7	575	602	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence Send to blast
MDTDDGSSSP LKENMDRTLQ ASNNLDLNVE QDCRSPKFMH SNGIQSNLYL KDGVSKDAAL 60 KIGTEFESDE HAYKFYNKYA RLVGFSVRKD WVNRSKVHGQ VVSRKFTCSR EGYRRKDKRD 120 INVKKHRKET RTGCLAHMII TRQPDGKYQV THFEEQHNHD NVNPTNAQTL SLQREFSCSP 180 ETEAGSATNL ESCSTSTFEL MTRQLEVRES LDVLALDSDN YLQSERLRDI KEGEAGRLLH 240 YFQRQHFENP SFFYALQLDI DDKVTNIFWA DDNMVLDYDH FSDVICLDTT SKSKKDFPPF 300 VQFIGVNHHR QVLIFAAALL YDDTVDSFKW LLQTFIEAMS GKKPKAILTD QDAAIIEAMN 360 SVLPETSHRI CVWQMYQNAL KHLSLLVKDV DSFAKDLKSC IYDHKDEEDF ICGWESMLEK 420 YGLQHNEWLR WMFREREKWA VVYGRNTFFV DMNGLHLGEC LFNDLGTRLN LDLDILLFIK 480 YFERVVDEQR CKETEANDEM SRCMPRLMGN VVLLKHASGV YTPRAFEVLQ REYEKCLNVV 540 VNRCSQNGSL IEYKVKKFGQ AREHTVTFNS SDSTVVCSCM KFEYVGFPCS HALKVLDHQN 600 IKIIPSCYIL KRWTKDGRSR SVKDCYNFTI EDNPKLVVAS RYKSLCHRML KLSARASESE 660 GAFQFAARQL DELMEGVEKI LTLKPEDAQA ITSSSTGANA SESEHAETFL DRNAIDDQDE 720 NRVKGPKEKV SGNSDRGPPV NVNGKLSHTK GVQNIEASPQ DIVTCISSPS RAYISPQATT 780 PNTIMQGMYN FEANQVVQCM YQQSNLVMDQ QPNPDIYQPA NIFSNQHDLP GQSQLLQEPL 840 IHNPYHESVS STSQLRQAMD LDVQHEHSSS FLLFDERYRA SSNYLGPK

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence Send to blast

MDTDDGSSSP LKENMDRTLQ ASNNLDLNVE QDCRSPKFMH SNGIQSNLYL KDGVSKDAAL  60
KIGTEFESDE HAYKFYNKYA RLVGFSVRKD WVNRSKVHGQ VVSRKFTCSR EGYRRKDKRD  120
INVKKHRKET RTGCLAHMII TRQPDGKYQV THFEEQHNHD NVNPTNAQTL SLQREFSCSP  180
ETEAGSATNL ESCSTSTFEL MTRQLEVRES LDVLALDSDN YLQSERLRDI KEGEAGRLLH  240
YFQRQHFENP SFFYALQLDI DDKVTNIFWA DDNMVLDYDH FSDVICLDTT SKSKKDFPPF  300
VQFIGVNHHR QVLIFAAALL YDDTVDSFKW LLQTFIEAMS GKKPKAILTD QDAAIIEAMN  360
SVLPETSHRI CVWQMYQNAL KHLSLLVKDV DSFAKDLKSC IYDHKDEEDF ICGWESMLEK  420
YGLQHNEWLR WMFREREKWA VVYGRNTFFV DMNGLHLGEC LFNDLGTRLN LDLDILLFIK  480
YFERVVDEQR CKETEANDEM SRCMPRLMGN VVLLKHASGV YTPRAFEVLQ REYEKCLNVV  540
VNRCSQNGSL IEYKVKKFGQ AREHTVTFNS SDSTVVCSCM KFEYVGFPCS HALKVLDHQN  600
IKIIPSCYIL KRWTKDGRSR SVKDCYNFTI EDNPKLVVAS RYKSLCHRML KLSARASESE  660
GAFQFAARQL DELMEGVEKI LTLKPEDAQA ITSSSTGANA SESEHAETFL DRNAIDDQDE  720
NRVKGPKEKV SGNSDRGPPV NVNGKLSHTK GVQNIEASPQ DIVTCISSPS RAYISPQATT  780
PNTIMQGMYN FEANQVVQCM YQQSNLVMDQ QPNPDIYQPA NIFSNQHDLP GQSQLLQEPL  840
IHNPYHESVS STSQLRQAMD LDVQHEHSSS FLLFDERYRA SSNYLGPK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018830774.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
TrEMBL	A0A2I4FGK7	0.0	A0A2I4FGK7_JUGRE; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
STRING	XP_008234281.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-113	FAR1-related sequence 5