PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004392-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 386aa    MW: 41851.2 Da    PI: 8.0291
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004392-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08104124526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+++ + G C yG++C+F H+
  WALNUT_00004392-RA 104 ICKYWVQ-GNCGYGEQCRFLHS 124
                         8******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.5962046IPR000571Zinc finger, CCCH-type
SMARTSM003560.372145IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-699125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.73799126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-799124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-8102123IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-6103124IPR000571Zinc finger, CCCH-type
SuperFamilySSF509782.69E-35122380IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.1E-33124380IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.3E-5130169IPR001680WD40 repeat
PfamPF004003.2E-4134169IPR001680WD40 repeat
PROSITE profilePS5029413.369137299IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.084137178IPR001680WD40 repeat
PROSITE patternPS006780156170IPR019775WD40 repeat, conserved site
SMARTSM003206209246IPR001680WD40 repeat
SMARTSM003200.017253290IPR001680WD40 repeat
PfamPF004000.013257289IPR001680WD40 repeat
PROSITE profilePS500829.506260289IPR001680WD40 repeat
SMARTSM0032077294337IPR001680WD40 repeat
SMARTSM003204.9340377IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDLDSGNKRM FQRLGGPVDP KNQKVCFHWR AGNCTRHPCP YLHRELPPPP SNGSSSKRAH  60
GFVDDSSGFS GPRARTNYTG STWGRSHGGA NSRTVRKPER VSKICKYWVQ GNCGYGEQCR  120
FLHSWSLGEG FSMLTQLEGH QKVVSGIALP SGSNNLYTGS KDETVRVWDC QSGQCMGVIN  180
LGGEVGCMIS EGPWLFVGIP NIVKAWNTQT STELSLSGPV GQVYAMVVGS DLLFAGTQDG  240
SILAWKFNAV TNCFEPAASL KGHTLGVVSL VVGANRLYSG SMDCTIRVWV ATESGNLEVT  300
YTHEEEHGLL TLRGMHDSEA KPILLCSSNG NSVHLYDLPS FTERGKIFAK QEVRAIQVGP  360
GGLFFTGDGA GQVKVWQWST EPTANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B5e-12116340175391F-box/WD repeat protein 7
2ovq_B5e-12116340175391F-box/WD repeat protein 7
2ovr_B5e-12116340175391F-box/WD repeat protein 7
5v4b_B5e-12116340175391F-box/WD repeat-containing protein 7
6g6m_A4e-121253808320Tako8
6g6n_A4e-121253808320Tako8
6g6n_B4e-121253808320Tako8
6g6n_C4e-121253808320Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830667.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A2I4FGA40.0A0A2I4FGA4_JUGRE; zinc finger CCCH domain-containing protein 48-like
STRINGEMJ192310.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1