PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004468-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 326aa    MW: 37089.2 Da    PI: 4.85
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004468-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.1e-19114163255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  WALNUT_00004468-RA 114 KFRGVRQRP-WGKWAAEIRDPL----RrIRLWLGTYDTAEEAAMVYDNAAIQLRG 163
                         89*******.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-29113171IPR001471AP2/ERF domain
PfamPF008475.3E-12114163IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-21114171IPR016177DNA-binding domain
PROSITE profilePS5103223.354114171IPR001471AP2/ERF domain
CDDcd000186.61E-32114171No hitNo description
SMARTSM003806.6E-37114177IPR001471AP2/ERF domain
PRINTSPR003674.7E-10115126IPR001471AP2/ERF domain
PRINTSPR003674.7E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MNHHSVNAIP PIKYTEHRNI TKLVRPVPEE IKRRVVRISV TDGDATDSSS DEEDGEEVCF  60
RRQRVKKFID EITIESCSSQ NDGVSRSRSA RSARKKTARV SESHRVLKVP GARKFRGVRQ  120
RPWGKWAAEI RDPLRRIRLW LGTYDTAEEA AMVYDNAAIQ LRGPDAFTNF ATPPTSKHPT  180
ENKPMRCSGY NSGEESHNNR LCSPTSVLRC SSPSNEEMEL QSPEIIKEIV QVGDIQDESC  240
MSENFLEFSE YSTFDSLIPN DIFDFESPAT SLFEKTSLGD NFFEEECGDV FLSSCENFGF  300
DFSRWHVDDY FQDIGDIFGS DPLMAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-19113170159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-19112170362ATERF1
3gcc_A6e-19112170362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829056.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
RefseqXP_018855058.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLA0A2I4FBN40.0A0A2I4FBN4_JUGRE; ethylene-responsive transcription factor CRF2-like
STRINGEMJ100541e-124(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-64cytokinin response factor 2