PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004560-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 294aa    MW: 32115.7 Da    PI: 4.819
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004560-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-194189355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  WALNUT_00004560-RA 41 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 89
                        67******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.46E-303996No hitNo description
PROSITE profilePS5103220.7054097IPR001471AP2/ERF domain
SMARTSM003801.3E-3440103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-294197IPR001471AP2/ERF domain
PRINTSPR003673.8E-84152IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-214198IPR016177DNA-binding domain
PfamPF008476.2E-124389IPR001471AP2/ERF domain
PRINTSPR003673.8E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSSFNNSSSA NSPSSSSKSK RKQQQQQPVL ENQQQQGEAR FLGVRRRPWG RYAAEIRDPS  60
TKERHWLGTF DTAEEAALAY DRAARSMRGS KARTNFVYSD MPPGSSVTSI ISPDETQHDI  120
SALFAPHQQQ NDTNTHSSTH LFFGQDPFFD ISACPFSGGD DWAQGQGTTT CGSTYQPITA  180
ITDGGQSQSQ EQPHSHTYKS HDSTELPPLP PDASTFYGAG VMGSNMGQEL WSDTSFLGFS  240
EQTTNGLDSA VTAPYLGFDS NEFVQHSPLF GRMPPVPESG TDGFDLGSSS AYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-194196359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829151.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A2I4FBX80.0A0A2I4FBX8_JUGRE; ethylene-responsive transcription factor LEP-like
STRINGEOX995731e-114(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-38ERF family protein