PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004567-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 481aa    MW: 52821.8 Da    PI: 8.0743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004567-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-0585107123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y C+ C+k F r  nL+ H r H
  WALNUT_00004567-RA  85 YICEVCHKGFQRDQNLQLHRRGH 107
                         89*******************88 PP
2zf-C2H211.60.00088161183123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC  C+k++  +s+ k H + +
  WALNUT_00004567-RA 161 WKCDRCSKRYAVQSDWKAHTKIC 183
                         58*****************9987 PP
3zf-C2H2110.0013191209523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg+ Fsrk+++++H   +
  WALNUT_00004567-RA 191 DCGTIFSRKDSFVTHRAFC 209
                         8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.01E-684107No hitNo description
PROSITE profilePS5015710.74185107IPR007087Zinc finger, C2H2
SMARTSM003550.03885107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM00355140126156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-4149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.01E-6156181No hitNo description
SMARTSM00355220161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSNFAPEFKD DEQFQSIIVS QSSTGSPPHA EKSGDGSTPS TISKRKRNLP GNPGKQTFCI  60
SFSLNDPDAE VVALSPRTLM ATNRYICEVC HKGFQRDQNL QLHRRGHNLP WKLKQRTNIQ  120
VKKRVYVCPE PNCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDRCSKRY AVQSDWKAHT  180
KICGTREYRC DCGTIFSRKD SFVTHRAFCD ALTEENNRVN QSFAATGGML QSHAQELFIS  240
SMPGSYSCSE TNTTMNLSIS NENVDNSLKP LSSGSAGVMI SSNLDPTFDP RTTRTCFSSE  300
GGSNAYPMTI DSCYTSATAL LQKAAEMGAK TSDNSFAPIF LKGFNGYPIS SMNSSGSVQV  360
GSSGGIMGLN TNGSIERDRE PYDKTLDPGD HEPNYTISHS QTGLFHSPLS VHTENGHGPG  420
HAGNLLRHVY IGEGEKMTVD FLGVESAGNS STGKKRSYDG NVIGLEYSNA QQSVQNLHSE  480
W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33157220366Zinc finger protein JACKDAW
5b3h_F2e-33157220366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829070.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-105IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2I4FBN50.0A0A2I4FBN5_JUGRE; protein indeterminate-domain 2-like
STRINGcassava4.1_024252m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1704078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-107indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]