PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00004597-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 325aa MW: 36134.4 Da PI: 6.3304

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00004597-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.7	7.2e-32	81	172	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++ eHnH+l+ WALNUT_00004597-RA 81 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHALV 171 **************************************998888545677889********************************98 PP FAR1 91 p 91 p WALNUT_00004597-RA 172 P 172 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-30	81	172	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MDNEILEFDI GLGGGGGGRE VDDDGIDIDD EEMADSPSPT SGGAGGGAAS SGEIYLPEGD 60 LLDLEPYEGM EFESEEAAKA FYNSYARRVG FSTRVSSSRR SRRDGAIIQR QFVCAKEGFR 120 NLNEKRTKDR EIKRPRTITR VGCKASLSVK MQDSGKWVVS GFVREHNHAL VPPDLVHCLR 180 SHRQISVRYN TLRHEAFKFV DDAVKSQETY DAAMDALQVA AKKVAHATKS EGKLGMANGV 240 ARRNLAFDGS TNRTRDDFEG RSAQHMSEDD MDKRIRELTN ELEGANRKCE VYRANLLSVL 300 KDIEDHKLQL SIKVQNIKIS MKDGL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021636089.1	9e-97	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021636090.1	9e-97	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	1e-84	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A314YYQ3	1e-149	A0A314YYQ3_PRUYE; Protein FAR1-RELATED SEQUENCE 5
STRING	EOX98949	6e-91	(Theobroma cacao)
STRING	evm.model.supercontig_60.4	5e-96	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-66	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]