PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00004851-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YC

Protein Properties

Length: 218aa MW: 24513.5 Da PI: 10.2555

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00004851-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	46.1	1.1e-14	109	200	8	99
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++++++d+k h++P+ rik i+++++ +++ ea ++ ka e f+ ++t ++ + ++++l +++++ t +dfl d vp+ WALNUT_00004851-RA 109 EEVGEKQDVKTHRFPMHRIKTIIRSENSDLRVTQEALFVVNKATEKFLEQFTKDAYSCCVGDRKKSLAYKHLSSVICTTRRYDFLSDFVPE 199 568899*******************999*********************************************************98 PP NF-YC 99 d 99 + WALNUT_00004851-RA 200 K 200 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.44E-17	110	203	IPR009072	Histone-fold
Pfam	PF00808	5.5E-15	121	183	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	6.7E-22	122	199	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MASSKQSAAE KKTKATKLTK SSKKQNGIVT TKRNPEKNNK TANGTVSHSN GFVSIPSSSV 60 ESQEDGEQGR SRSAGTSKRA RVTKPTKGKR KQREEEVNDV VGQREEEEEE VGEKQDVKTH 120 RFPMHRIKTI IRSENSDLRV TQEALFVVNK ATEKFLEQFT KDAYSCCVGD RKKSLAYKHL 180 SSVICTTRRY DFLSDFVPEK IKAENALAER KLNETEVG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018819559.1	1e-159	PREDICTED: DNA polymerase epsilon subunit C-like
TrEMBL	A0A2I4EJI4	1e-157	A0A2I4EJI4_JUGRE; DNA polymerase epsilon subunit C-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12016	30	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	9e-34	nuclear factor Y, subunit C10